Variant report

Variant	rs11838769
Chromosome Location	chr13:80031943-80031944
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:80025882..80028470-chr13:80030398..80033837,6	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11549502	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11839222	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs17431002	0.81[EUR][1000 genomes]
rs4884132	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4885635	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4885639	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4885641	0.81[EUR][1000 genomes]
rs67435118	0.85[AMR][1000 genomes]
rs7321672	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs73234683	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73234690	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73235960	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7399942	0.82[EUR][1000 genomes]
rs7983288	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7983516	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7990729	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7991663	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7992646	0.88[AMR][1000 genomes]
rs8000301	0.92[AMR][1000 genomes]
rs9530926	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9530927	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9530928	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9530932	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9530933	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9530935	0.82[EUR][1000 genomes]
rs9530936	0.81[EUR][1000 genomes]
rs9545119	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9545126	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9545127	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9545129	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9545130	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9545132	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9545140	0.82[EUR][1000 genomes]
rs9545141	0.82[EUR][1000 genomes]
rs9545143	0.81[EUR][1000 genomes]
rs9545144	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832657	chr13:79904978-80099108	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv523979	chr13:79979679-80120263	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80020600-80034000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:80026600-80032000	Weak transcription	K562	blood
3	chr13:80026800-80033600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:80027200-80032200	Weak transcription	Dnd41	blood
5	chr13:80027400-80032800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr13:80028000-80032000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr13:80029000-80032400	Enhancers	Osteobl	bone
8	chr13:80030200-80032000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr13:80030200-80033400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr13:80030400-80032000	Weak transcription	NH-A	brain
11	chr13:80030400-80033400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr13:80030400-80033800	Weak transcription	HSMM	muscle
13	chr13:80031400-80032000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr13:80031600-80033000	Enhancers	HUVEC	blood vessel
15	chr13:80031800-80033000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr13:80031800-80033000	Enhancers	Hela-S3	cervix

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