Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:80008934..80011323-chr13:80013139..80015497,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11619563	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11838769	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs11839222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12146935	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4884132	0.87[AMR][1000 genomes]
rs4885635	0.89[AMR][1000 genomes]
rs4885639	0.89[AMR][1000 genomes]
rs67435118	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73234683	0.89[AMR][1000 genomes]
rs73235960	0.89[AMR][1000 genomes]
rs7983288	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7991663	0.89[AMR][1000 genomes]
rs7992646	0.83[AMR][1000 genomes]
rs8000301	0.87[AMR][1000 genomes]
rs9530926	0.87[AMR][1000 genomes]
rs9530927	0.89[AMR][1000 genomes]
rs9545115	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9545126	0.89[AMR][1000 genomes]
rs9545129	0.89[AMR][1000 genomes]
rs9545132	0.89[AMR][1000 genomes]
rs958316	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs983927	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832657	chr13:79904978-80099108	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv523979	chr13:79979679-80120263	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79981200-80010200	Weak transcription	Right Ventricle	heart
2	chr13:80007400-80009800	Weak transcription	Fetal Intestine Small	intestine
3	chr13:80008000-80010000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:80008000-80010000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr13:80008000-80010000	Enhancers	Hela-S3	cervix
6	chr13:80008000-80010400	Enhancers	Osteobl	bone
7	chr13:80008400-80009800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr13:80008400-80009800	Enhancers	NHDF-Ad	bronchial
9	chr13:80008400-80010200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr13:80008600-80010000	Enhancers	NH-A	brain
11	chr13:80008600-80010200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr13:80008600-80010200	Enhancers	HSMM	muscle
13	chr13:80008600-80010200	Enhancers	HSMMtube	muscle
14	chr13:80008800-80009800	Enhancers	Stomach Mucosa	stomach
15	chr13:80008800-80010400	Enhancers	Muscle Satellite Cultured Cells	--
16	chr13:80009000-80010800	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr13:80009200-80009800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr13:80009200-80010200	Enhancers	Fetal Heart	heart
19	chr13:80009400-80010200	Enhancers	A549	lung

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