Variant report

Variant	rs9545115
Chromosome Location	chr13:80013616-80013617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11549502	0.91[CEU][hapmap];0.94[AMR][1000 genomes]
rs11619563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11839222	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12146935	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67435118	0.96[EUR][1000 genomes]
rs7321672	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73234690	0.94[AMR][1000 genomes]
rs7983516	0.91[AMR][1000 genomes]
rs7990729	0.94[AMR][1000 genomes]
rs9530928	0.94[AMR][1000 genomes]
rs9530932	0.94[AMR][1000 genomes]
rs9530933	0.92[CEU][hapmap];0.94[AMR][1000 genomes]
rs9545119	0.94[AMR][1000 genomes]
rs9545127	0.91[CEU][hapmap];0.94[AMR][1000 genomes]
rs9545130	0.91[CEU][hapmap];0.94[AMR][1000 genomes]
rs958316	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs983927	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832657	chr13:79904978-80099108	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv523979	chr13:79979679-80120263	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80010000-80015400	Weak transcription	Hela-S3	cervix
2	chr13:80010200-80015200	Weak transcription	A549	lung
3	chr13:80010200-80025600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:80010800-80014200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr13:80010800-80014200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr13:80013200-80015600	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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