Variant report

Variant	rs17431002
Chromosome Location	chr13:80149445-80149446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs11549502	0.81[EUR][1000 genomes]
rs11838700	1.00[ASN][1000 genomes]
rs11838769	0.81[EUR][1000 genomes]
rs11839689	1.00[ASN][1000 genomes]
rs11840407	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11841756	1.00[ASN][1000 genomes]
rs11843917	1.00[ASN][1000 genomes]
rs1335372	1.00[ASN][1000 genomes]
rs17071492	1.00[ASN][1000 genomes]
rs17071589	1.00[ASN][1000 genomes]
rs17071629	1.00[CHB][hapmap];0.92[YRI][hapmap];1.00[ASN][1000 genomes]
rs4884132	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885635	1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885639	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4885641	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55820419	1.00[ASN][1000 genomes]
rs56863569	1.00[ASN][1000 genomes]
rs58069884	1.00[ASN][1000 genomes]
rs58233612	1.00[ASN][1000 genomes]
rs58264675	1.00[ASN][1000 genomes]
rs59251364	1.00[ASN][1000 genomes]
rs59319360	1.00[ASN][1000 genomes]
rs60016606	1.00[ASN][1000 genomes]
rs6563111	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs67435118	1.00[ASN][1000 genomes]
rs7139902	1.00[ASN][1000 genomes]
rs73234683	0.84[EUR][1000 genomes]
rs73234690	0.81[EUR][1000 genomes]
rs73235960	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7325970	1.00[ASN][1000 genomes]
rs7337908	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7338662	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs73548905	1.00[ASN][1000 genomes]
rs73548913	1.00[ASN][1000 genomes]
rs73548931	1.00[ASN][1000 genomes]
rs73548932	1.00[ASN][1000 genomes]
rs73548936	1.00[ASN][1000 genomes]
rs73548939	1.00[ASN][1000 genomes]
rs73548952	1.00[ASN][1000 genomes]
rs73548962	1.00[ASN][1000 genomes]
rs73548974	1.00[ASN][1000 genomes]
rs73551514	1.00[ASN][1000 genomes]
rs73551516	1.00[ASN][1000 genomes]
rs7399942	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs74098308	1.00[ASN][1000 genomes]
rs74098315	1.00[ASN][1000 genomes]
rs74098399	1.00[ASN][1000 genomes]
rs7983312	1.00[ASN][1000 genomes]
rs7983516	0.81[EUR][1000 genomes]
rs7985220	1.00[ASN][1000 genomes]
rs7985239	1.00[ASN][1000 genomes]
rs7985291	1.00[ASN][1000 genomes]
rs7990729	0.81[EUR][1000 genomes]
rs7991663	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7992646	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7995350	1.00[ASN][1000 genomes]
rs7995408	1.00[ASN][1000 genomes]
rs7995717	1.00[ASN][1000 genomes]
rs8000301	1.00[CHB][hapmap]
rs8002638	1.00[ASN][1000 genomes]
rs9530926	0.84[EUR][1000 genomes]
rs9530927	1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs9530928	0.81[EUR][1000 genomes]
rs9530932	0.81[EUR][1000 genomes]
rs9530933	0.81[EUR][1000 genomes]
rs9530935	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9530936	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9545119	0.81[EUR][1000 genomes]
rs9545126	1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs9545127	0.81[EUR][1000 genomes]
rs9545129	1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9545130	0.81[EUR][1000 genomes]
rs9545132	1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9545140	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9545141	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9545143	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9545144	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916983	chr13:80065879-80249702	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1041994	chr13:80123596-80247708	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80140600-80155800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links