Variant report

Variant	rs11838700
Chromosome Location	chr13:80015847-80015848
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs11838897	1.00[EUR][1000 genomes]
rs11839689	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11840407	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11841482	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11841756	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11841968	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11843203	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11843917	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11843939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1335372	1.00[ASN][1000 genomes]
rs17071492	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17071589	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17071629	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17431002	1.00[ASN][1000 genomes]
rs35724140	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41364649	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs4884132	1.00[ASN][1000 genomes]
rs4885635	1.00[ASN][1000 genomes]
rs4885639	1.00[ASN][1000 genomes]
rs4885641	1.00[ASN][1000 genomes]
rs55820419	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56863569	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58069884	1.00[ASN][1000 genomes]
rs58233612	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58264675	1.00[ASN][1000 genomes]
rs59251364	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59319360	1.00[ASN][1000 genomes]
rs60016606	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6563111	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67435118	1.00[ASN][1000 genomes]
rs7139902	1.00[ASN][1000 genomes]
rs73235960	1.00[ASN][1000 genomes]
rs7325970	1.00[ASN][1000 genomes]
rs7337908	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7338662	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73548905	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73548913	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73548931	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73548932	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73548936	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73548939	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73548952	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73548962	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73548974	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551514	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551516	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74098308	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74098315	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74098399	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7983312	1.00[ASN][1000 genomes]
rs7985220	1.00[ASN][1000 genomes]
rs7985239	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7985291	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7991663	1.00[ASN][1000 genomes]
rs7992646	1.00[ASN][1000 genomes]
rs7994370	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7995350	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7995408	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7995717	1.00[ASN][1000 genomes]
rs7996153	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8002638	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9530936	1.00[ASN][1000 genomes]
rs9545129	1.00[ASN][1000 genomes]
rs9545132	1.00[ASN][1000 genomes]
rs9545143	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832657	chr13:79904978-80099108	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv523979	chr13:79979679-80120263	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80010200-80025600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:80015200-80016200	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr13:80015400-80016000	Enhancers	Hela-S3	cervix
4	chr13:80015400-80016000	Enhancers	HepG2	liver
5	chr13:80015400-80016200	Enhancers	H1 Cell Line	embryonic stem cell
6	chr13:80015400-80016200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr13:80015400-80016200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr13:80015400-80020200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr13:80015600-80016000	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr13:80015600-80016000	Flanking Active TSS	Stomach Mucosa	stomach
11	chr13:80015600-80016400	Enhancers	Pancreas	Pancrea
12	chr13:80015600-80017000	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr13:80015800-80016000	Weak transcription	Fetal Intestine Large	intestine
14	chr13:80015800-80016000	Enhancers	A549	lung
15	chr13:80015800-80016200	Enhancers	Colonic Mucosa	Colon
16	chr13:80015800-80016400	Enhancers	Duodenum Mucosa	Duodenum
17	chr13:80015800-80016400	Enhancers	Rectal Mucosa Donor 31	rectum

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