Variant report

Variant	rs57032852
Chromosome Location	chr13:80124096-80124097
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:80123748..80125276-chr13:80125653..80128359,2	K562	blood:
2	chr13:80120811..80122493-chr13:80123557..80126338,2	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10492579	1.00[EUR][1000 genomes]
rs10507899	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1335373	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1335374	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1414157	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17071499	0.92[EUR][1000 genomes]
rs17071532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17071549	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17071558	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17071566	1.00[EUR][1000 genomes]
rs17071574	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17071585	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17071627	1.00[EUR][1000 genomes]
rs17071632	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs41288268	0.92[EUR][1000 genomes]
rs56711390	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57929179	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58056613	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58069884	0.82[EUR][1000 genomes]
rs58406632	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59165380	0.89[EUR][1000 genomes]
rs59381369	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59755477	0.80[EUR][1000 genomes]
rs59783325	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60126328	0.92[EUR][1000 genomes]
rs61318325	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61676417	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6563117	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7317409	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7317511	1.00[EUR][1000 genomes]
rs7318854	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7327148	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7329633	0.84[EUR][1000 genomes]
rs7335191	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7338043	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73548951	0.92[EUR][1000 genomes]
rs73548955	0.92[EUR][1000 genomes]
rs73551558	0.92[EUR][1000 genomes]
rs73551595	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73551596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73551597	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73551601	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73551602	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73553403	1.00[EUR][1000 genomes]
rs73553418	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73553424	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73553431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73553447	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73553448	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73553473	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73553481	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73553499	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73555409	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73555411	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73555415	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7491258	0.92[EUR][1000 genomes]
rs7981574	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7984159	0.92[EUR][1000 genomes]
rs7984598	0.88[EUR][1000 genomes]
rs7985220	0.82[EUR][1000 genomes]
rs7985697	0.92[EUR][1000 genomes]
rs7990190	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7990464	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7997554	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7998452	1.00[EUR][1000 genomes]
rs8000870	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916983	chr13:80065879-80249702	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1041994	chr13:80123596-80247708	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80087400-80134000	Weak transcription	Aorta	Aorta
2	chr13:80087400-80134600	Weak transcription	Pancreas	Pancrea
3	chr13:80098600-80135000	Weak transcription	Placenta	Placenta
4	chr13:80099400-80133200	Weak transcription	Psoas Muscle	Psoas
5	chr13:80100600-80136400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr13:80100800-80133200	Weak transcription	Hela-S3	cervix
7	chr13:80101800-80133200	Weak transcription	Primary T cells from cord blood	blood
8	chr13:80102200-80133600	Weak transcription	Gastric	stomach
9	chr13:80104800-80133600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr13:80108400-80132200	Weak transcription	A549	lung
11	chr13:80109000-80129400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr13:80109000-80133200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr13:80109000-80133200	Weak transcription	HSMM	muscle
14	chr13:80109200-80133200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr13:80109600-80133200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr13:80109800-80128000	Weak transcription	NHDF-Ad	bronchial
17	chr13:80109800-80131600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr13:80110600-80133200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr13:80112600-80131800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr13:80112600-80133200	Weak transcription	Osteobl	bone
21	chr13:80113200-80131600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr13:80113200-80133800	Weak transcription	Left Ventricle	heart
23	chr13:80114400-80130600	Weak transcription	NHEK	skin
24	chr13:80114400-80131600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr13:80114600-80131800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr13:80115000-80133800	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr13:80115200-80127800	Strong transcription	Dnd41	blood
28	chr13:80120200-80132000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr13:80120200-80134200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr13:80121800-80124200	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr13:80122000-80133200	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr13:80122200-80133000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr13:80122800-80124200	Enhancers	Pancreatic Islets	Pancreatic Islet
34	chr13:80122800-80124400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr13:80123000-80124200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr13:80123000-80124200	Enhancers	Fetal Heart	heart
37	chr13:80123000-80131600	Weak transcription	Liver	Liver
38	chr13:80123000-80135000	Weak transcription	Stomach Mucosa	stomach
39	chr13:80123200-80124200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr13:80123200-80124200	Enhancers	Fetal Intestine Large	intestine
41	chr13:80123200-80124200	Enhancers	Fetal Kidney	kidney
42	chr13:80123200-80124200	Enhancers	NH-A	brain
43	chr13:80123200-80129000	Weak transcription	Rectal Smooth Muscle	rectum
44	chr13:80123400-80124400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr13:80123600-80124200	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr13:80123600-80124200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr13:80123600-80124200	Enhancers	Brain Angular Gyrus	brain
48	chr13:80123600-80124200	Enhancers	Fetal Brain Male	brain
49	chr13:80123600-80124200	Enhancers	Fetal Intestine Small	intestine
50	chr13:80123600-80124200	Enhancers	HSMMtube	muscle

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