Variant report

Variant	rs73555409
Chromosome Location	chr13:80156540-80156541
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10492579	0.88[EUR][1000 genomes]
rs10507899	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1335373	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1335374	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1414157	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17071499	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17071532	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17071549	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17071558	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17071566	0.88[EUR][1000 genomes]
rs17071574	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17071585	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17071627	0.88[EUR][1000 genomes]
rs17071632	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41288268	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56711390	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57032852	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57929179	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58056613	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58406632	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59381369	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59755477	0.89[AMR][1000 genomes]
rs59783325	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60126328	0.96[EUR][1000 genomes]
rs60194813	0.87[AMR][1000 genomes]
rs61151618	0.87[AMR][1000 genomes]
rs61318325	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61676417	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6563117	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7317409	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7317511	0.88[EUR][1000 genomes]
rs7318854	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7327148	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7329633	0.89[AMR][1000 genomes]
rs7330804	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7335191	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7338043	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73548951	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73548955	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73551558	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73551595	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73551596	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73551597	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73551601	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73551602	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73553403	0.88[EUR][1000 genomes]
rs73553418	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73553424	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73553431	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73553447	0.88[EUR][1000 genomes]
rs73553448	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73553473	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73553481	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73553499	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73555411	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73555415	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73566469	0.87[AMR][1000 genomes]
rs7491258	0.80[EUR][1000 genomes]
rs7981574	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7984159	0.80[EUR][1000 genomes]
rs7985697	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7990190	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7990464	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7997554	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7998452	0.88[EUR][1000 genomes]
rs8000870	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916983	chr13:80065879-80249702	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1041994	chr13:80123596-80247708	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80155600-80156600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr13:80155600-80156600	Enhancers	Brain Hippocampus Middle	brain
3	chr13:80155600-80156600	Enhancers	Esophagus	oesophagus
4	chr13:80155600-80156600	Enhancers	Placenta	Placenta
5	chr13:80155600-80156600	Enhancers	HSMMtube	muscle
6	chr13:80155600-80156800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr13:80155600-80156800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr13:80155600-80156800	Enhancers	Fetal Muscle Leg	muscle
9	chr13:80155800-80156600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr13:80155800-80156600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr13:80155800-80156600	Enhancers	Fetal Muscle Trunk	muscle
12	chr13:80155800-80156800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr13:80155800-80156800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr13:80155800-80156800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr13:80155800-80156800	Enhancers	HSMM	muscle
16	chr13:80155800-80156800	Enhancers	NHEK	skin
17	chr13:80155800-80157400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr13:80156000-80156600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr13:80156000-80156600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr13:80156000-80156600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr13:80156000-80156800	Enhancers	Placenta Amnion	Placenta Amnion
22	chr13:80156000-80157400	Enhancers	Adipose Nuclei	Adipose
23	chr13:80156200-80156600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr13:80156400-80156800	Enhancers	NHDF-Ad	bronchial

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