Variant report

Variant	rs59755477
Chromosome Location	chr13:80015573-80015574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10492579	0.80[EUR][1000 genomes]
rs10507899	0.95[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1335372	0.85[EUR][1000 genomes]
rs1335373	0.88[AFR][1000 genomes]
rs1335374	0.86[AFR][1000 genomes]
rs1414157	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs17071385	0.84[EUR][1000 genomes]
rs17071415	0.84[EUR][1000 genomes]
rs17071499	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17071532	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs17071549	0.89[AMR][1000 genomes]
rs17071558	0.92[AFR][1000 genomes]
rs17071566	0.80[EUR][1000 genomes]
rs17071574	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs17071585	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs17071627	0.80[EUR][1000 genomes]
rs17071632	0.86[AFR][1000 genomes]
rs41288268	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56711390	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs57032852	0.80[EUR][1000 genomes]
rs57544957	0.84[EUR][1000 genomes]
rs57929179	0.89[AMR][1000 genomes]
rs58056613	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58264675	0.85[EUR][1000 genomes]
rs58406632	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs59381369	0.86[AFR][1000 genomes]
rs59773478	0.84[EUR][1000 genomes]
rs59783325	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs61318325	0.89[AMR][1000 genomes]
rs61676417	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs6563107	0.84[EUR][1000 genomes]
rs6563117	0.91[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7139902	0.85[EUR][1000 genomes]
rs7317409	0.86[AFR][1000 genomes]
rs7317511	0.80[EUR][1000 genomes]
rs7318854	0.88[AFR][1000 genomes]
rs7318984	0.88[EUR][1000 genomes]
rs7327148	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7329633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7330804	0.88[EUR][1000 genomes]
rs7335191	0.89[AMR][1000 genomes]
rs7338043	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs73548948	0.85[EUR][1000 genomes]
rs73548951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73548955	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73551558	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73551595	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs73551596	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs73551597	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs73551601	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs73551602	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs73553403	0.80[EUR][1000 genomes]
rs73553418	0.89[AMR][1000 genomes]
rs73553424	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs73553431	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs73553447	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs73553448	0.89[AMR][1000 genomes]
rs73553473	0.95[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs73553481	0.92[AFR][1000 genomes]
rs73553499	0.91[AFR][1000 genomes]
rs73555409	0.89[AMR][1000 genomes]
rs73555411	0.88[AFR][1000 genomes]
rs73555415	0.88[AFR][1000 genomes]
rs73566422	0.84[EUR][1000 genomes]
rs73566424	0.84[EUR][1000 genomes]
rs73566435	0.84[EUR][1000 genomes]
rs73566454	0.84[EUR][1000 genomes]
rs7491258	0.88[EUR][1000 genomes]
rs7981574	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7984159	0.88[EUR][1000 genomes]
rs7984598	0.84[EUR][1000 genomes]
rs7985697	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7990190	0.95[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7990464	0.95[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7992181	0.84[EUR][1000 genomes]
rs7997554	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7998452	0.80[EUR][1000 genomes]
rs8000870	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832657	chr13:79904978-80099108	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv523979	chr13:79979679-80120263	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80010200-80025600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:80013200-80015600	Enhancers	Stomach Mucosa	stomach
3	chr13:80014200-80015800	Enhancers	Fetal Intestine Small	intestine
4	chr13:80014800-80015800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
5	chr13:80015200-80015600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr13:80015200-80015600	Enhancers	H9 Cell Line	embryonic stem cell
7	chr13:80015200-80015600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
8	chr13:80015200-80015600	Enhancers	A549	lung
9	chr13:80015200-80015800	Flanking Active TSS	Duodenum Mucosa	Duodenum
10	chr13:80015200-80016200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr13:80015400-80015600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr13:80015400-80015600	Enhancers	Colonic Mucosa	Colon
13	chr13:80015400-80015800	Flanking Active TSS	Fetal Intestine Large	intestine
14	chr13:80015400-80015800	Active TSS	Rectal Smooth Muscle	rectum
15	chr13:80015400-80016000	Enhancers	Hela-S3	cervix
16	chr13:80015400-80016000	Enhancers	HepG2	liver
17	chr13:80015400-80016200	Enhancers	H1 Cell Line	embryonic stem cell
18	chr13:80015400-80016200	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr13:80015400-80016200	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr13:80015400-80020200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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