Variant report

Variant	rs58056613
Chromosome Location	chr13:80042854-80042855
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10492579	0.88[EUR][1000 genomes]
rs10507899	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1335373	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1335374	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1414157	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17071385	0.84[EUR][1000 genomes]
rs17071415	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17071499	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17071532	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17071549	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17071558	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17071566	0.88[EUR][1000 genomes]
rs17071574	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17071585	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17071627	0.88[EUR][1000 genomes]
rs17071632	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs41288268	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56711390	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57032852	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57544957	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs57929179	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58069884	0.85[EUR][1000 genomes]
rs58406632	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59381369	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs59755477	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59773478	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs59783325	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60126328	0.80[EUR][1000 genomes]
rs60194813	0.87[AMR][1000 genomes]
rs61151618	0.87[AMR][1000 genomes]
rs61318325	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61676417	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6563107	0.84[EUR][1000 genomes]
rs6563117	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7317409	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7317511	0.88[EUR][1000 genomes]
rs7318854	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7318984	0.80[EUR][1000 genomes]
rs7327148	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7329633	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7330804	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7335191	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7338043	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73548951	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73548955	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73551558	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73551595	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73551596	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73551597	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73551601	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73551602	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73553403	0.88[EUR][1000 genomes]
rs73553418	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73553424	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73553431	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73553447	0.88[EUR][1000 genomes]
rs73553448	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73553473	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73553481	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73553499	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73555409	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73555411	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73555415	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73566422	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs73566424	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs73566435	0.84[EUR][1000 genomes]
rs73566454	0.84[EUR][1000 genomes]
rs73566469	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7491258	0.96[EUR][1000 genomes]
rs7981574	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7984159	0.96[EUR][1000 genomes]
rs7984598	0.92[EUR][1000 genomes]
rs7985220	0.85[EUR][1000 genomes]
rs7985697	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7990190	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7990464	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7992181	0.84[EUR][1000 genomes]
rs7997554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7998452	0.88[EUR][1000 genomes]
rs8000870	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832657	chr13:79904978-80099108	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv523979	chr13:79979679-80120263	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:80042400-80043200	Enhancers	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links