The 2.0 version of rSNPBase

Variant report

Variant rs10188548
Chromosome Location chr2:54831883-54831884
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:54822200-54833800 Genic enhancers HepG2 liver
2 chr2:54822400-54833600 Enhancers Psoas Muscle Psoas
3 chr2:54822400-54833800 Enhancers Stomach Mucosa stomach
4 chr2:54822400-54834000 Enhancers Right Atrium heart
5 chr2:54824200-54833600 Enhancers Breast Myoepithelial Primary Cells Breast
6 chr2:54824600-54834400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
7 chr2:54824800-54834400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
8 chr2:54824800-54839200 Weak transcription Cortex derived primary cultured neurospheres brain
9 chr2:54826600-54832000 Genic enhancers Fetal Intestine Small intestine
10 chr2:54826800-54834400 Enhancers Primary T killer memory cells from peripheral blood blood
11 chr2:54827200-54832200 Enhancers Stomach Smooth Muscle stomach
12 chr2:54827200-54833800 Enhancers Skeletal Muscle Male skeletal muscle
13 chr2:54827200-54834000 Enhancers Primary T helper 17 cells PMA-I stimulated --
14 chr2:54827200-54839000 Weak transcription Hela-S3 cervix
15 chr2:54827400-54832000 Weak transcription Brain Germinal Matrix brain
16 chr2:54827400-54832000 Weak transcription Fetal Brain Female brain
17 chr2:54827600-54832200 Enhancers Primary T helper cells fromperipheralblood blood
18 chr2:54827600-54833000 Enhancers Skeletal Muscle Female skeletal muscle
19 chr2:54827600-54834000 Enhancers Duodenum Smooth Muscle Duodenum
20 chr2:54827600-54834000 Enhancers Right Ventricle heart
21 chr2:54827600-54834400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
22 chr2:54827600-54834400 Enhancers Primary T killer naive cells fromperipheralblood blood
23 chr2:54827600-54839200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr2:54827600-54839200 Weak transcription Dnd41 blood
25 chr2:54827800-54834000 Enhancers Brain Anterior Caudate brain
26 chr2:54827800-54834000 Enhancers NHDF-Ad bronchial
27 chr2:54827800-54835600 Enhancers Primary T helper naive cells from peripheral blood blood
28 chr2:54828000-54832000 Enhancers Brain Substantia Nigra brain
29 chr2:54828000-54833000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr2:54828000-54833000 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
31 chr2:54828000-54833200 Enhancers Small Intestine intestine
32 chr2:54828000-54833600 Enhancers Fetal Kidney kidney
33 chr2:54828000-54834200 Enhancers Brain Inferior Temporal Lobe brain
34 chr2:54828200-54832000 Enhancers Fetal Muscle Leg muscle
35 chr2:54828200-54832200 Enhancers NHLF lung
36 chr2:54828200-54833200 Enhancers Duodenum Mucosa Duodenum
37 chr2:54828200-54833600 Enhancers Colon Smooth Muscle Colon
38 chr2:54828200-54833800 Enhancers Gastric stomach
39 chr2:54828200-54833800 Enhancers Spleen Spleen
40 chr2:54828200-54834000 Enhancers Left Ventricle heart
41 chr2:54828200-54834200 Enhancers Muscle Satellite Cultured Cells --
42 chr2:54828200-54834200 Enhancers Brain Cingulate Gyrus brain
43 chr2:54828200-54834400 Enhancers Brain Angular Gyrus brain
44 chr2:54828400-54833400 Enhancers Pancreas Pancrea
45 chr2:54828400-54833800 Enhancers Primary Natural Killer cells fromperipheralblood blood
46 chr2:54828400-54834000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
47 chr2:54828400-54834200 Enhancers HUVEC blood vessel
48 chr2:54828400-54834600 Enhancers Primary T cells fromperipheralblood blood
49 chr2:54828600-54832000 Enhancers Primary hematopoietic stem cells short term culture blood
50 chr2:54828600-54832400 Enhancers Ovary ovary

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Last update: Aug 31, 2015