Variant report

Variant	rs164941
Chromosome Location	chr2:54993592-54993593
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10172671	1.00[ASN][1000 genomes]
rs10182310	1.00[ASN][1000 genomes]
rs10188548	1.00[ASN][1000 genomes]
rs10194488	1.00[ASN][1000 genomes]
rs10195423	1.00[ASN][1000 genomes]
rs13414727	1.00[ASN][1000 genomes]
rs13415949	1.00[ASN][1000 genomes]
rs13426037	1.00[ASN][1000 genomes]
rs13427468	1.00[ASN][1000 genomes]
rs13428524	1.00[ASN][1000 genomes]
rs2229505	1.00[ASN][1000 genomes]
rs2578715	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28660202	1.00[ASN][1000 genomes]
rs354194	1.00[AFR][1000 genomes]
rs6545448	1.00[ASN][1000 genomes]
rs6735962	1.00[ASN][1000 genomes]
rs9808516	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33638	chr2:54765256-55109455	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv582024	chr2:54894649-54999712	Active TSS Bivalent Enhancer Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1005449	chr2:54938633-55129503	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv1844855	chr2:54987215-55012202	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:54985800-54995400	Weak transcription	Primary B cells from cord blood	blood
2	chr2:54992000-54993600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr2:54992000-54994200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:54992000-54994200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:54992000-54994200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:54992000-54994600	Weak transcription	HMEC	breast
7	chr2:54992200-54998600	Weak transcription	Fetal Brain Female	brain
8	chr2:54993400-54995600	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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