Variant report

Variant	rs10189022
Chromosome Location	chr2:73427222-73427223
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr2:73426769-73427227	HepG2	liver:	n/a	n/a
2	NR2F2	chr2:73426787-73427234	HepG2	liver:	n/a	n/a
3	FOXA1	chr2:73426794-73427274	HepG2	liver:	n/a	n/a
4	FOXA2	chr2:73426856-73427226	HepG2	liver:	n/a	n/a
5	NR2F2	chr2:73426922-73427278	HepG2	liver:	n/a	n/a
6	FOXA1	chr2:73426900-73427259	HepG2	liver:	n/a	n/a
7	FOXA1	chr2:73426889-73427338	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
NOTO	TF binding region

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10048837	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10048838	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10175626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10199536	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11893547	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11894720	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11894877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11902788	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13386236	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13409784	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs13415504	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008829	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17008862	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17008864	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes]
rs2043092	1.00[JPT][hapmap]
rs2288632	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3820701	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs546576	1.00[JPT][hapmap]
rs56276021	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72809926	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7594590	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006801	chr2:73305056-73431711	Weak transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73427200-73430800	Weak transcription	HepG2	liver

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