Variant report
Variant | rs2043092 |
---|---|
Chromosome Location | chr2:73407076-73407077 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
1
No data |
No data |
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Variant related genes | Relation type |
---|---|
ENSG00000135631 | Chromatin interaction |
ENSG00000144040 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10048666 | 0.89[ASN][1000 genomes] |
rs10048720 | 0.89[ASN][1000 genomes] |
rs10048837 | 1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.89[ASN][1000 genomes] |
rs10048838 | 1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
rs10175626 | 1.00[JPT][hapmap] |
rs10185970 | 0.89[ASN][1000 genomes] |
rs10189022 | 1.00[JPT][hapmap] |
rs10193579 | 0.89[ASN][1000 genomes] |
rs10194871 | 1.00[CHB][hapmap] |
rs10195007 | 1.00[ASN][1000 genomes] |
rs10195282 | 1.00[ASN][1000 genomes] |
rs10198711 | 1.00[ASN][1000 genomes] |
rs11884073 | 0.89[ASN][1000 genomes] |
rs11888772 | 1.00[ASN][1000 genomes] |
rs11893547 | 1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];1.00[ASN][1000 genomes] |
rs11902788 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
rs13009208 | 1.00[ASN][1000 genomes] |
rs13385938 | 1.00[ASN][1000 genomes] |
rs13386236 | 1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
rs13404992 | 1.00[ASN][1000 genomes] |
rs13409784 | 1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
rs13415504 | 1.00[CHD][hapmap];1.00[JPT][hapmap] |
rs13423796 | 0.89[ASN][1000 genomes] |
rs13424035 | 1.00[ASN][1000 genomes] |
rs17008829 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs17008862 | 1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];1.00[ASN][1000 genomes] |
rs17008864 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2288632 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs28464603 | 1.00[ASN][1000 genomes] |
rs28494567 | 1.00[ASN][1000 genomes] |
rs3768636 | 1.00[ASN][1000 genomes] |
rs3820701 | 1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];1.00[ASN][1000 genomes] |
rs546576 | 1.00[JPT][hapmap] |
rs57321619 | 0.89[ASN][1000 genomes] |
rs60913601 | 1.00[ASN][1000 genomes] |
rs61534579 | 1.00[ASN][1000 genomes] |
rs6757079 | 1.00[ASN][1000 genomes] |
rs72903461 | 0.89[ASN][1000 genomes] |
rs7594590 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1006801 | chr2:73305056-73431711 | Weak transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:73405400-73412400 | Weak transcription | Pancreas | Pancrea |