Variant report

Variant	rs11888772
Chromosome Location	chr2:73488449-73488450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:73486200..73488897-chr2:73493971..73496948,2	K562	blood:
2	chr2:73460407..73462653-chr2:73487685..73489732,2	MCF-7	breast:
3	chr2:73487574..73489635-chr2:73494654..73498160,4	MCF-7	breast:
4	chr2:73440680..73443455-chr2:73487460..73489544,2	MCF-7	breast:
5	chr2:73470578..73472224-chr2:73487614..73490047,2	K562	blood:
6	chr2:73458216..73464453-chr2:73481843..73489108,12	K562	blood:
7	chr2:73470422..73472224-chr2:73486157..73490047,3	K562	blood:
8	chr2:73403840..73406267-chr2:73486278..73488731,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000135624	Chromatin interaction
ENSG00000163013	Chromatin interaction
ENSG00000135632	Chromatin interaction
ENSG00000135617	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10048666	0.89[ASN][1000 genomes]
rs10048720	0.89[ASN][1000 genomes]
rs10048837	0.89[ASN][1000 genomes]
rs10048838	0.89[ASN][1000 genomes]
rs10185970	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10193579	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10195007	1.00[ASN][1000 genomes]
rs10195282	1.00[ASN][1000 genomes]
rs10198711	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11884073	0.89[ASN][1000 genomes]
rs11893547	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13009208	1.00[ASN][1000 genomes]
rs13385938	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13386236	0.89[ASN][1000 genomes]
rs13404992	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13409784	0.89[ASN][1000 genomes]
rs13423796	0.89[ASN][1000 genomes]
rs13424035	1.00[ASN][1000 genomes]
rs17008829	1.00[ASN][1000 genomes]
rs17008862	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008864	1.00[ASN][1000 genomes]
rs2043092	1.00[ASN][1000 genomes]
rs2288632	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28464603	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28494567	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3768636	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3820701	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57321619	0.89[ASN][1000 genomes]
rs60913601	1.00[ASN][1000 genomes]
rs61534579	1.00[ASN][1000 genomes]
rs6757079	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72903461	0.89[ASN][1000 genomes]
rs7594590	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73464800-73495800	Weak transcription	Right Atrium	heart
2	chr2:73471600-73493600	Strong transcription	Fetal Brain Female	brain
3	chr2:73477200-73494000	Weak transcription	Fetal Brain Male	brain
4	chr2:73480200-73494400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr2:73480400-73490200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr2:73480400-73490600	Weak transcription	Hela-S3	cervix
7	chr2:73481400-73492800	Weak transcription	Colonic Mucosa	Colon
8	chr2:73481600-73493800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:73481600-73495600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr2:73481600-73495600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr2:73481800-73493200	Weak transcription	HSMM	muscle
12	chr2:73481800-73510000	Weak transcription	K562	blood
13	chr2:73482000-73489200	Weak transcription	Brain Angular Gyrus	brain
14	chr2:73482000-73492400	Weak transcription	Brain Substantia Nigra	brain
15	chr2:73482000-73492600	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr2:73482000-73492600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr2:73482000-73493400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr2:73482000-73495400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr2:73482200-73493000	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr2:73482400-73490200	Weak transcription	Gastric	stomach
21	chr2:73482400-73491200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr2:73482400-73493400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr2:73482400-73493600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr2:73482400-73495600	Weak transcription	A549	lung
25	chr2:73482600-73490200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr2:73482600-73493400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr2:73482600-73493600	Weak transcription	Fetal Intestine Large	intestine
28	chr2:73482600-73494200	Weak transcription	Esophagus	oesophagus
29	chr2:73482800-73495600	Weak transcription	Duodenum Mucosa	Duodenum
30	chr2:73482800-73499200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr2:73483000-73490400	Weak transcription	Ovary	ovary
32	chr2:73483000-73494000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr2:73483200-73494000	Weak transcription	NHEK	skin
34	chr2:73483200-73495600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr2:73483200-73495600	Weak transcription	Lung	lung
36	chr2:73483400-73495600	Weak transcription	HMEC	breast
37	chr2:73483600-73490600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr2:73483600-73493600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr2:73483800-73493400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr2:73484000-73490600	Weak transcription	Brain Anterior Caudate	brain
41	chr2:73484800-73495600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr2:73485200-73491200	Strong transcription	Primary B cells from peripheral blood	blood
43	chr2:73485200-73499800	Strong transcription	Dnd41	blood
44	chr2:73485400-73491800	Strong transcription	Primary T cells from cord blood	blood
45	chr2:73485400-73494400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr2:73485400-73495200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr2:73485400-73495600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr2:73485400-73496000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr2:73485600-73494000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr2:73485600-73495800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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