Variant report

Variant	rs13423796
Chromosome Location	chr2:73361080-73361081
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10048666	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10048720	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10048837	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10048838	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10195007	0.89[ASN][1000 genomes]
rs10195282	0.89[ASN][1000 genomes]
rs10198711	0.89[ASN][1000 genomes]
rs11884073	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11888772	0.89[ASN][1000 genomes]
rs11893547	0.89[ASN][1000 genomes]
rs13009208	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13385938	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13386236	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13404992	0.89[ASN][1000 genomes]
rs13424035	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17008829	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17008862	0.89[ASN][1000 genomes]
rs17008864	0.89[ASN][1000 genomes]
rs2043092	0.89[ASN][1000 genomes]
rs2288632	0.89[ASN][1000 genomes]
rs28464603	0.89[ASN][1000 genomes]
rs28494567	0.89[ASN][1000 genomes]
rs3768636	0.89[ASN][1000 genomes]
rs3820701	0.89[ASN][1000 genomes]
rs57321619	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60913601	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61534579	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6757079	0.89[ASN][1000 genomes]
rs72903461	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7594590	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006801	chr2:73305056-73431711	Weak transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73360600-73361200	Enhancers	Pancreas	Pancrea
2	chr2:73360600-73362000	Enhancers	HUVEC	blood vessel
3	chr2:73360800-73361200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:73360800-73361200	Enhancers	Adipose Nuclei	Adipose
5	chr2:73360800-73361200	Enhancers	Right Atrium	heart
6	chr2:73360800-73361200	Enhancers	A549	lung
7	chr2:73360800-73361400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
8	chr2:73360800-73361400	Enhancers	Spleen	Spleen
9	chr2:73360800-73361600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr2:73360800-73361800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr2:73360800-73361800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr2:73360800-73362000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr2:73360800-73362000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr2:73360800-73362000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr2:73360800-73362000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr2:73360800-73362000	Enhancers	NHDF-Ad	bronchial
17	chr2:73361000-73361400	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr2:73361000-73361600	Enhancers	H9 Cell Line	embryonic stem cell
19	chr2:73361000-73361600	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr2:73361000-73361600	Enhancers	Liver	Liver
21	chr2:73361000-73361600	Enhancers	Fetal Kidney	kidney
22	chr2:73361000-73362000	Enhancers	Osteobl	bone

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