Variant report

Variant	rs10193579
Chromosome Location	chr2:73483753-73483754
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:73481859..73485012-chr2:73498373..73502378,4	K562	blood:
2	chr2:73477828..73480452-chr2:73482883..73484447,2	K562	blood:
3	chr2:73458216..73464453-chr2:73481843..73489108,12	K562	blood:
4	chr2:73479273..73487563-chr2:73490596..73499512,12	MCF-7	breast:
5	chr2:73439692..73442945-chr2:73480540..73483945,4	K562	blood:
6	chr2:73481187..73484150-chr2:73485125..73487393,2	K562	blood:

Variant related genes	Relation type
ENSG00000135617	Chromatin interaction
ENSG00000135624	Chromatin interaction
ENSG00000163013	Chromatin interaction
ENSG00000135632	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10048666	0.80[EUR][1000 genomes]
rs10048720	0.80[EUR][1000 genomes]
rs10048837	0.80[EUR][1000 genomes]
rs10048838	0.80[EUR][1000 genomes]
rs10185970	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10195007	0.89[ASN][1000 genomes]
rs10195282	0.89[ASN][1000 genomes]
rs10198711	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11888772	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11893547	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13009208	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13385938	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13386236	0.80[EUR][1000 genomes]
rs13404992	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13424035	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17008829	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17008862	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17008864	0.89[ASN][1000 genomes]
rs2043092	0.89[ASN][1000 genomes]
rs2288632	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28464603	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28494567	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3768636	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3820701	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57321619	0.80[EUR][1000 genomes]
rs60913601	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61534579	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6757079	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7594590	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73463600-73483800	Strong transcription	Primary B cells from cord blood	blood
2	chr2:73464400-73484000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:73464800-73483800	Strong transcription	Fetal Muscle Leg	muscle
4	chr2:73464800-73495800	Weak transcription	Right Atrium	heart
5	chr2:73465000-73484600	Strong transcription	Primary T cells from cord blood	blood
6	chr2:73467200-73483800	Strong transcription	Dnd41	blood
7	chr2:73469800-73488000	Strong transcription	Brain Germinal Matrix	brain
8	chr2:73470000-73487600	Strong transcription	Thymus	Thymus
9	chr2:73471600-73493600	Strong transcription	Fetal Brain Female	brain
10	chr2:73471800-73483800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr2:73474200-73487400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr2:73477000-73483800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr2:73477200-73494000	Weak transcription	Fetal Brain Male	brain
14	chr2:73477800-73485000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr2:73478400-73484000	Weak transcription	Psoas Muscle	Psoas
16	chr2:73480000-73485000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr2:73480200-73485000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr2:73480200-73494400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr2:73480400-73484000	Weak transcription	Colon Smooth Muscle	Colon
20	chr2:73480400-73490200	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr2:73480400-73490600	Weak transcription	Hela-S3	cervix
22	chr2:73480600-73485000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr2:73480800-73484000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr2:73481400-73485000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr2:73481400-73485600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr2:73481400-73492800	Weak transcription	Colonic Mucosa	Colon
27	chr2:73481600-73484000	Weak transcription	HSMMtube	muscle
28	chr2:73481600-73485000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr2:73481600-73485600	Weak transcription	HepG2	liver
30	chr2:73481600-73493800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr2:73481600-73495600	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr2:73481600-73495600	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr2:73481800-73483800	Weak transcription	NH-A	brain
34	chr2:73481800-73484000	Weak transcription	Fetal Lung	lung
35	chr2:73481800-73484200	Weak transcription	Aorta	Aorta
36	chr2:73481800-73485000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr2:73481800-73485800	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr2:73481800-73493200	Weak transcription	HSMM	muscle
39	chr2:73481800-73510000	Weak transcription	K562	blood
40	chr2:73482000-73484800	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr2:73482000-73485200	Weak transcription	HUVEC	blood vessel
42	chr2:73482000-73489200	Weak transcription	Brain Angular Gyrus	brain
43	chr2:73482000-73492400	Weak transcription	Brain Substantia Nigra	brain
44	chr2:73482000-73492600	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr2:73482000-73492600	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr2:73482000-73493400	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr2:73482000-73495400	Weak transcription	Primary hematopoietic stem cells	blood
48	chr2:73482200-73484400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr2:73482200-73484800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr2:73482200-73485000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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