Variant report

Variant	rs10189024
Chromosome Location	chr2:141917330-141917331
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10169082	0.88[CEU][hapmap];0.87[CHB][hapmap]
rs10180339	0.92[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap]
rs10194319	0.86[CHB][hapmap]
rs1033284	0.88[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap]
rs1249426	0.88[CEU][hapmap];0.83[TSI][hapmap]
rs1249429	0.96[CEU][hapmap];0.86[JPT][hapmap]
rs1249447	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1249452	0.88[CEU][hapmap];0.86[CHB][hapmap]
rs1249454	0.88[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap]
rs1249455	0.92[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.86[JPT][hapmap];0.86[TSI][hapmap]
rs1249457	0.92[CEU][hapmap];0.86[CHB][hapmap];0.80[JPT][hapmap]
rs1249458	0.88[CEU][hapmap];0.86[CHB][hapmap];0.80[JPT][hapmap]
rs12613639	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs12691594	1.00[CEU][hapmap];0.93[GIH][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.95[EUR][1000 genomes]
rs12691595	0.82[CEU][hapmap];0.91[CHB][hapmap]
rs13426911	0.81[CHD][hapmap]
rs1518800	0.84[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap]
rs1518802	0.82[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs1543181	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap]
rs1714259	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2203809	0.92[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2222232	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2222233	0.88[CEU][hapmap];0.86[CHB][hapmap];0.85[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs4954893	0.82[CEU][hapmap];0.83[CHD][hapmap]
rs6711588	0.87[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap]
rs6730244	0.82[CHB][hapmap]
rs6741156	0.82[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];0.85[JPT][hapmap]
rs7424161	0.81[CEU][hapmap];0.83[CHD][hapmap]
rs7579252	0.91[ASN][1000 genomes]
rs7583934	0.88[CEU][hapmap]
rs9287313	0.88[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv817518	chr2:141714174-142287302	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv875217	chr2:141800473-141919943	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv875218	chr2:141800473-141925845	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1003799	chr2:141803314-142033675	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv459563	chr2:141803602-141925075	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv583200	chr2:141803602-141925075	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1009434	chr2:141832339-142156180	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv875225	chr2:141841920-141919943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv875226	chr2:141841920-141921632	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv875227	chr2:141841920-141928275	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv875228	chr2:141841920-141949292	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1005236	chr2:141860005-142047695	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv535948	chr2:141860005-142047695	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv459585	chr2:141867448-141921632	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv583202	chr2:141867448-141921632	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv818086	chr2:141905052-141921632	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv875229	chr2:141905052-141951944	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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