Variant report

Variant	rs1714259
Chromosome Location	chr2:141932472-141932473
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10169082	0.86[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap]
rs10180339	0.93[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap]
rs10189024	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap]
rs10194319	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs1033284	0.86[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap]
rs1249426	0.88[CEU][hapmap];0.83[JPT][hapmap];0.81[EUR][1000 genomes]
rs1249429	0.92[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1249447	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1249452	0.86[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap]
rs1249454	0.86[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap]
rs1249455	0.92[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap]
rs1249457	0.92[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap]
rs1249458	0.89[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap]
rs12613639	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs12691594	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12691595	0.83[CEU][hapmap];0.86[CHB][hapmap]
rs1518800	0.82[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap]
rs1518802	0.83[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap]
rs1543181	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs2203809	0.93[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2222232	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2222233	0.88[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs4954893	0.82[CEU][hapmap]
rs6711588	0.84[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap]
rs6730244	0.86[CHB][hapmap]
rs6741156	0.82[CEU][hapmap];0.86[CHB][hapmap]
rs7424161	0.82[CEU][hapmap]
rs7579252	0.91[ASN][1000 genomes]
rs7583934	0.88[CEU][hapmap]
rs9287313	0.86[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv817518	chr2:141714174-142287302	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1003799	chr2:141803314-142033675	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1009434	chr2:141832339-142156180	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv875228	chr2:141841920-141949292	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1005236	chr2:141860005-142047695	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv535948	chr2:141860005-142047695	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv875229	chr2:141905052-141951944	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv961350	chr2:141931830-141937012	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141932400-141932800	Weak transcription	Brain Substantia Nigra	brain

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