Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:142299065..142301455-chr2:142302719..142305386,2	MCF-7	breast:
2	chr2:142303735..142305902-chr2:142307985..142310549,2	K562	blood:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10168866	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs10178630	1.00[EUR][1000 genomes]
rs10183016	1.00[CEU][hapmap];0.83[JPT][hapmap];0.87[EUR][1000 genomes]
rs10187201	0.96[EUR][1000 genomes]
rs10196328	0.83[JPT][hapmap]
rs10196829	0.96[EUR][1000 genomes]
rs10198366	0.96[EUR][1000 genomes]
rs10199890	1.00[AFR][1000 genomes]
rs10201404	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10210140	0.96[EUR][1000 genomes]
rs10496888	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10928110	0.87[EUR][1000 genomes]
rs13398188	0.87[EUR][1000 genomes]
rs13426117	0.87[EUR][1000 genomes]
rs16846523	0.96[EUR][1000 genomes]
rs16855058	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs2381191	0.91[EUR][1000 genomes]
rs28380114	0.96[EUR][1000 genomes]
rs35363313	1.00[AFR][1000 genomes]
rs4538134	1.00[CEU][hapmap]
rs58008346	0.96[EUR][1000 genomes]
rs6711361	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs72855478	0.96[EUR][1000 genomes]
rs7575547	0.96[EUR][1000 genomes]
rs7589324	0.96[EUR][1000 genomes]
rs7602707	0.92[JPT][hapmap]
rs7606738	1.00[CEU][hapmap];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583203	chr2:142055133-142378975	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875240	chr2:142199421-142347455	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv834393	chr2:142256714-142431564	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
4	nsv583212	chr2:142263979-142309330	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	nsv459640	chr2:142291211-142345574	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv583213	chr2:142291211-142345574	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv583214	chr2:142299923-142458316	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142303800-142304800	Enhancers	Brain Inferior Temporal Lobe	brain
2	chr2:142303800-142305200	Enhancers	Brain Anterior Caudate	brain

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