Variant report

Variant	rs7606738
Chromosome Location	chr2:142368156-142368157
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:142267530..142270120-chr2:142367084..142369508,2	MCF-7	breast:
2	chr2:142363098..142365424-chr2:142366631..142368354,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10168866	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10178630	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10183016	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10187201	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10190973	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10196328	1.00[CHB][hapmap]
rs10196829	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10198366	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10210140	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10496888	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10928110	0.83[EUR][1000 genomes]
rs13398188	0.83[EUR][1000 genomes]
rs13426117	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16846523	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2381191	0.87[EUR][1000 genomes]
rs28380114	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4538134	1.00[CEU][hapmap]
rs58008346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6711361	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72855478	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7575547	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7589324	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583203	chr2:142055133-142378975	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv834393	chr2:142256714-142431564	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
3	nsv583214	chr2:142299923-142458316	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv1011019	chr2:142314999-142430460	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv875244	chr2:142336104-142421500	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv875245	chr2:142336104-142421500	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142364400-142368200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:142366800-142368600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr2:142366800-142368800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr2:142366800-142369600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:142367000-142368600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr2:142367000-142368600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr2:142367200-142368400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr2:142367400-142368200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr2:142367400-142368600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr2:142367800-142368600	Enhancers	H9 Cell Line	embryonic stem cell
11	chr2:142368000-142368200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr2:142368000-142368200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr2:142368000-142368200	Enhancers	Fetal Heart	heart
14	chr2:142368000-142368400	Enhancers	Gastric	stomach
15	chr2:142368000-142368400	Enhancers	Pancreas	Pancrea
16	chr2:142368000-142368400	Enhancers	HUVEC	blood vessel
17	chr2:142368000-142368600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr2:142368000-142368600	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr2:142368000-142368600	Enhancers	Dnd41	blood
20	chr2:142368000-142368600	Enhancers	Hela-S3	cervix
21	chr2:142368000-142368800	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr2:142368000-142368800	Enhancers	Brain Substantia Nigra	brain
23	chr2:142368000-142369800	Enhancers	H1 Cell Line	embryonic stem cell

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