Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13394351	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1446715	1.00[AMR][1000 genomes]
rs17013488	1.00[AMR][1000 genomes]
rs17013686	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56779577	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56785892	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57142792	1.00[AMR][1000 genomes]
rs57523279	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57595972	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58720566	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59910712	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61332902	1.00[AMR][1000 genomes]
rs72911821	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72911822	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72911827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72927322	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72927330	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72927334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72929360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72929366	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1014895	chr2:77263452-77414507	Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv458285	chr2:77276201-77345491	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases
4	nsv582252	chr2:77276201-77345491	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
5	nsv874332	chr2:77288585-77387208	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77300000-77311600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:77308200-77311600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr2:77308200-77312800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:77308400-77310400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr2:77308400-77311600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr2:77308600-77311400	Weak transcription	H9 Cell Line	embryonic stem cell

Quick Search: