Variant report

Variant	rs56785892
Chromosome Location	chr2:77286984-77286985
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10193399	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13394351	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1446715	1.00[AMR][1000 genomes]
rs17013488	1.00[AMR][1000 genomes]
rs17013686	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56779577	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57142792	1.00[AMR][1000 genomes]
rs57523279	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57595972	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58720566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59910712	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61332902	1.00[AMR][1000 genomes]
rs72911821	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72911822	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72911827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72927322	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72927330	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72927334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72929360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72929366	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv997284	chr2:77233426-77303198	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1014895	chr2:77263452-77414507	Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv874331	chr2:77264354-77305123	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
6	nsv458285	chr2:77276201-77345491	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases
7	nsv582252	chr2:77276201-77345491	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77286200-77287200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr2:77286400-77287200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:77286400-77287200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:77286600-77287200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr2:77286800-77287200	Enhancers	Brain Germinal Matrix	brain
6	chr2:77286800-77287400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:77286800-77287400	Enhancers	HUES64 Cell Line	embryonic stem cell

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