Variant report

Variant	rs10195305
Chromosome Location	chr2:36607895-36607896
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10176691	0.80[ASN][1000 genomes]
rs10195419	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11124509	0.82[ASN][1000 genomes]
rs2287084	0.87[ASN][1000 genomes]
rs3755220	0.94[ASN][1000 genomes]
rs3755221	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4670546	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6544008	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36586200-36626600	Weak transcription	Primary B cells from cord blood	blood
2	chr2:36599400-36609600	Enhancers	HMEC	breast
3	chr2:36600000-36609000	Genic enhancers	HSMM	muscle
4	chr2:36600400-36612000	Genic enhancers	Osteobl	bone
5	chr2:36600600-36608800	Genic enhancers	Muscle Satellite Cultured Cells	--
6	chr2:36603800-36612600	Weak transcription	Fetal Brain Female	brain
7	chr2:36604000-36614400	Genic enhancers	HUVEC	blood vessel
8	chr2:36604000-36617000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr2:36604400-36608000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr2:36604400-36608200	Weak transcription	Esophagus	oesophagus
11	chr2:36604400-36608200	Weak transcription	Right Atrium	heart
12	chr2:36604400-36608400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:36604400-36608600	Genic enhancers	NHEK	skin
14	chr2:36604400-36609400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr2:36604400-36611200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr2:36604400-36614000	Weak transcription	HSMMtube	muscle
17	chr2:36604400-36615000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr2:36604400-36615400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr2:36604400-36615600	Weak transcription	Fetal Muscle Leg	muscle
20	chr2:36604400-36616400	Weak transcription	Gastric	stomach
21	chr2:36604400-36620600	Weak transcription	Fetal Brain Male	brain
22	chr2:36604400-36640400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr2:36604400-36640600	Weak transcription	Brain Cingulate Gyrus	brain
24	chr2:36604600-36614800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr2:36604600-36617600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr2:36604600-36620800	Weak transcription	Brain Hippocampus Middle	brain
27	chr2:36604800-36608200	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr2:36604800-36608800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr2:36604800-36609400	Weak transcription	Stomach Smooth Muscle	stomach
30	chr2:36604800-36614400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr2:36605400-36609200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr2:36605400-36610000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr2:36606000-36608800	Genic enhancers	NH-A	brain
34	chr2:36606200-36608200	Enhancers	Fetal Kidney	kidney
35	chr2:36606200-36608400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr2:36606400-36608200	Genic enhancers	NHDF-Ad	bronchial
37	chr2:36606400-36608800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr2:36606600-36609000	Genic enhancers	Placenta	Placenta
39	chr2:36606600-36609000	Enhancers	Rectal Mucosa Donor 31	rectum
40	chr2:36606600-36609200	Enhancers	Colonic Mucosa	Colon
41	chr2:36606600-36609400	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr2:36606600-36609600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr2:36606600-36609800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr2:36606600-36610000	Enhancers	H1 Cell Line	embryonic stem cell
45	chr2:36606800-36608200	Weak transcription	Right Ventricle	heart
46	chr2:36606800-36609400	Enhancers	Fetal Intestine Large	intestine
47	chr2:36607000-36608000	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr2:36607000-36608000	Genic enhancers	Hela-S3	cervix
49	chr2:36607000-36608600	Enhancers	Ovary	ovary
50	chr2:36607000-36608800	Enhancers	Duodenum Mucosa	Duodenum

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