Variant report

Variant	rs3755220
Chromosome Location	chr2:36607251-36607252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36605517..36607622-chr2:36658577..36660490,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10195305	0.94[ASN][1000 genomes]
rs10195419	0.94[ASN][1000 genomes]
rs11901313	0.88[EUR][1000 genomes]
rs12466450	0.87[EUR][1000 genomes]
rs17018679	0.87[EUR][1000 genomes]
rs17018711	0.81[EUR][1000 genomes]
rs2287084	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3755219	0.92[EUR][1000 genomes]
rs3755221	0.99[ASN][1000 genomes]
rs3770918	0.81[EUR][1000 genomes]
rs3770933	0.81[EUR][1000 genomes]
rs3770934	0.81[EUR][1000 genomes]
rs3770951	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3770957	0.88[EUR][1000 genomes]
rs56295703	0.87[EUR][1000 genomes]
rs6544008	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36586200-36626600	Weak transcription	Primary B cells from cord blood	blood
2	chr2:36599400-36609600	Enhancers	HMEC	breast
3	chr2:36600000-36609000	Genic enhancers	HSMM	muscle
4	chr2:36600400-36612000	Genic enhancers	Osteobl	bone
5	chr2:36600600-36608800	Genic enhancers	Muscle Satellite Cultured Cells	--
6	chr2:36603200-36607400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr2:36603800-36607600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:36603800-36612600	Weak transcription	Fetal Brain Female	brain
9	chr2:36604000-36614400	Genic enhancers	HUVEC	blood vessel
10	chr2:36604000-36617000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr2:36604200-36607400	Weak transcription	Fetal Lung	lung
12	chr2:36604400-36607400	Weak transcription	Colon Smooth Muscle	Colon
13	chr2:36604400-36607600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr2:36604400-36608000	Weak transcription	Fetal Muscle Trunk	muscle
15	chr2:36604400-36608200	Weak transcription	Esophagus	oesophagus
16	chr2:36604400-36608200	Weak transcription	Right Atrium	heart
17	chr2:36604400-36608400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr2:36604400-36608600	Genic enhancers	NHEK	skin
19	chr2:36604400-36609400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr2:36604400-36611200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr2:36604400-36614000	Weak transcription	HSMMtube	muscle
22	chr2:36604400-36615000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr2:36604400-36615400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr2:36604400-36615600	Weak transcription	Fetal Muscle Leg	muscle
25	chr2:36604400-36616400	Weak transcription	Gastric	stomach
26	chr2:36604400-36620600	Weak transcription	Fetal Brain Male	brain
27	chr2:36604400-36640400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr2:36604400-36640600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr2:36604600-36614800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr2:36604600-36617600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr2:36604600-36620800	Weak transcription	Brain Hippocampus Middle	brain
32	chr2:36604800-36608200	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr2:36604800-36608800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr2:36604800-36609400	Weak transcription	Stomach Smooth Muscle	stomach
35	chr2:36604800-36614400	Weak transcription	Rectal Smooth Muscle	rectum
36	chr2:36605000-36607400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr2:36605400-36607600	Weak transcription	Small Intestine	intestine
38	chr2:36605400-36609200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr2:36605400-36610000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr2:36605600-36607600	Genic enhancers	HUES6 Cell Line	embryonic stem cell
41	chr2:36606000-36607600	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr2:36606000-36608800	Genic enhancers	NH-A	brain
43	chr2:36606200-36608200	Enhancers	Fetal Kidney	kidney
44	chr2:36606200-36608400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr2:36606400-36607400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr2:36606400-36607600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr2:36606400-36608200	Genic enhancers	NHDF-Ad	bronchial
48	chr2:36606400-36608800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr2:36606600-36607400	Enhancers	Rectal Mucosa Donor 29	rectum
50	chr2:36606600-36609000	Genic enhancers	Placenta	Placenta

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