Variant report

Variant	rs10195354
Chromosome Location	chr2:206273076-206273077
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:206270948..206273715-chr2:206278631..206280999,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10183801	1.00[AMR][1000 genomes]
rs10188158	1.00[AMR][1000 genomes]
rs7563903	1.00[AMR][1000 genomes]
rs7566344	1.00[AMR][1000 genomes]
rs7593014	1.00[AMR][1000 genomes]
rs849206	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv584244	chr2:206247450-206378392	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv10162	chr2:206272092-206525287	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206265400-206273200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr2:206265600-206276400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr2:206268600-206286600	Weak transcription	Fetal Intestine Small	intestine
4	chr2:206269800-206274600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:206270600-206274400	Enhancers	NHLF	lung
6	chr2:206270600-206276000	Weak transcription	Small Intestine	intestine
7	chr2:206270600-206308000	Weak transcription	HSMMtube	muscle
8	chr2:206270800-206273800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:206270800-206276000	Weak transcription	Ovary	ovary
10	chr2:206271000-206273600	Weak transcription	NHEK	skin
11	chr2:206271200-206274000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:206271800-206273200	Enhancers	HUVEC	blood vessel
13	chr2:206272200-206274400	Enhancers	Fetal Brain Male	brain
14	chr2:206272400-206273600	Enhancers	NH-A	brain
15	chr2:206272400-206274200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr2:206272400-206274400	Enhancers	Osteobl	bone
17	chr2:206272600-206273200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr2:206272600-206273600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr2:206272600-206275200	Bivalent Enhancer	Fetal Lung	lung
20	chr2:206272600-206277200	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr2:206272800-206273600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr2:206272800-206274200	Enhancers	Colon Smooth Muscle	Colon
23	chr2:206272800-206274800	Enhancers	HSMM	muscle
24	chr2:206273000-206273200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr2:206273000-206274400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr2:206273000-206274600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr2:206273000-206274800	Enhancers	NHDF-Ad	bronchial
28	chr2:206273000-206276000	Weak transcription	Fetal Muscle Leg	muscle
29	chr2:206273000-206276200	Weak transcription	Adipose Nuclei	Adipose
30	chr2:206273000-206276200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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