Variant report

Variant	rs849206
Chromosome Location	chr2:206235098-206235099
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10183801	1.00[AMR][1000 genomes]
rs10188158	1.00[AMR][1000 genomes]
rs10195354	1.00[AMR][1000 genomes]
rs1559008	1.00[AMR][1000 genomes]
rs1559009	1.00[AMR][1000 genomes]
rs1559010	1.00[AMR][1000 genomes]
rs4528737	1.00[AMR][1000 genomes]
rs7563903	1.00[AMR][1000 genomes]
rs7566344	1.00[AMR][1000 genomes]
rs7593014	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206197600-206240600	Weak transcription	Aorta	Aorta
2	chr2:206232600-206236200	Weak transcription	Brain Substantia Nigra	brain
3	chr2:206232800-206235800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:206234000-206235400	Enhancers	Ovary	ovary
5	chr2:206234400-206237000	Weak transcription	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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