Variant report

Variant	rs10195562
Chromosome Location	chr2:73140547-73140548
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10183113	0.85[CEU][hapmap]
rs10196456	0.85[CEU][hapmap]
rs10198441	0.94[CEU][hapmap];0.82[EUR][1000 genomes]
rs1048704	0.80[CEU][hapmap]
rs11682000	0.83[CEU][hapmap]
rs13428615	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6745468	0.94[CEU][hapmap];0.84[AMR][1000 genomes]
rs6748324	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532723	chr2:73088191-73219259	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv874266	chr2:73137991-73220138	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73140200-73141800	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
2	chr2:73140200-73141800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:73140400-73141800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
4	chr2:73140400-73141800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
5	chr2:73140400-73141800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
6	chr2:73140400-73142000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
7	chr2:73140400-73142200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:73140400-73142200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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