Variant report

Variant	rs6745468
Chromosome Location	chr2:73149795-73149796
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10183113	0.94[ASW][hapmap];0.90[CEU][hapmap];0.96[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs10195562	0.94[CEU][hapmap];0.84[AMR][1000 genomes]
rs10196456	0.94[ASW][hapmap];0.90[CEU][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];0.84[TSI][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes]
rs10196568	0.93[AFR][1000 genomes]
rs10198441	0.89[CEU][hapmap];0.83[GIH][hapmap];0.81[MEX][hapmap]
rs1048704	0.85[CEU][hapmap]
rs13428615	0.91[AMR][1000 genomes]
rs2077586	0.91[YRI][hapmap]
rs56703688	0.98[EUR][1000 genomes]
rs6748324	0.90[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532723	chr2:73088191-73219259	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv874266	chr2:73137991-73220138	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6745468	SFXN5	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73142800-73151800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr2:73147800-73150800	Weak transcription	Gastric	stomach
3	chr2:73148000-73151200	Weak transcription	Pancreas	Pancrea
4	chr2:73148600-73153000	Bivalent Enhancer	Fetal Brain Male	brain
5	chr2:73149600-73150000	Bivalent Enhancer	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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