Variant report

Variant	rs10195587
Chromosome Location	chr2:173088472-173088473
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173082820..173084740-chr2:173087213..173089169,2	MCF-7	breast:
2	chr2:173082842..173085574-chr2:173086283..173088823,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10182389	1.00[EUR][1000 genomes]
rs10182528	1.00[EUR][1000 genomes]
rs10205762	1.00[EUR][1000 genomes]
rs10206186	1.00[EUR][1000 genomes]
rs10930531	0.87[ASN][1000 genomes]
rs12468634	1.00[EUR][1000 genomes]
rs12617862	0.88[ASN][1000 genomes]
rs13382231	1.00[EUR][1000 genomes]
rs13397362	1.00[EUR][1000 genomes]
rs13403893	1.00[EUR][1000 genomes]
rs13407052	1.00[EUR][1000 genomes]
rs13411249	1.00[EUR][1000 genomes]
rs13411530	1.00[EUR][1000 genomes]
rs13417240	1.00[EUR][1000 genomes]
rs13426090	1.00[EUR][1000 genomes]
rs13432301	1.00[EUR][1000 genomes]
rs16860144	1.00[EUR][1000 genomes]
rs2357320	0.89[ASN][1000 genomes]
rs28446437	1.00[EUR][1000 genomes]
rs28453886	1.00[EUR][1000 genomes]
rs2884154	0.88[ASN][1000 genomes]
rs4972713	0.85[ASN][1000 genomes]
rs4972716	0.87[ASN][1000 genomes]
rs6433352	1.00[EUR][1000 genomes]
rs6710573	1.00[EUR][1000 genomes]
rs6717806	0.87[ASN][1000 genomes]
rs6720201	1.00[EUR][1000 genomes]
rs6733461	1.00[EUR][1000 genomes]
rs6752598	1.00[EUR][1000 genomes]
rs6753115	1.00[EUR][1000 genomes]
rs6761574	1.00[EUR][1000 genomes]
rs6761700	1.00[EUR][1000 genomes]
rs73024858	1.00[EUR][1000 genomes]
rs73024860	1.00[EUR][1000 genomes]
rs73024866	1.00[EUR][1000 genomes]
rs7559516	1.00[EUR][1000 genomes]
rs7570341	1.00[EUR][1000 genomes]
rs7570443	1.00[EUR][1000 genomes]
rs7597248	1.00[EUR][1000 genomes]
rs7600301	1.00[EUR][1000 genomes]
rs963307	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875413	chr2:173009413-173097343	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv3033	chr2:173063284-173108586	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173079800-173092000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr2:173082200-173090600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:173082200-173090600	Weak transcription	HMEC	breast
4	chr2:173082200-173092000	Weak transcription	Esophagus	oesophagus
5	chr2:173083200-173092400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr2:173086000-173091200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr2:173086200-173090000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr2:173086200-173091000	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr2:173087000-173089200	Enhancers	Primary T cells fromperipheralblood	blood
10	chr2:173087000-173091200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr2:173087200-173088800	Enhancers	Thymus	Thymus
12	chr2:173087200-173089000	Enhancers	Fetal Thymus	thymus
13	chr2:173087200-173091400	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr2:173087400-173091000	Enhancers	Primary T cells from cord blood	blood
15	chr2:173087400-173091200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr2:173087400-173091200	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr2:173087600-173088800	Enhancers	Primary hematopoietic stem cells	blood
18	chr2:173087600-173088800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr2:173087600-173089400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr2:173087600-173091200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr2:173087600-173091200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr2:173087800-173088600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
23	chr2:173087800-173088800	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr2:173087800-173091200	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr2:173087800-173098000	Enhancers	Fetal Intestine Small	intestine
26	chr2:173087800-173098800	Enhancers	Fetal Intestine Large	intestine
27	chr2:173088000-173088800	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr2:173088000-173089000	Enhancers	Stomach Mucosa	stomach
29	chr2:173088200-173088800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr2:173088200-173088800	Enhancers	Duodenum Mucosa	Duodenum
31	chr2:173088200-173088800	Enhancers	A549	lung
32	chr2:173088200-173090200	Weak transcription	Colonic Mucosa	Colon
33	chr2:173088400-173088600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr2:173088400-173088600	Enhancers	Gastric	stomach
35	chr2:173088400-173088600	Enhancers	Small Intestine	intestine
36	chr2:173088400-173088800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr2:173088400-173088800	Enhancers	NHEK	skin
38	chr2:173088400-173089000	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr2:173088400-173089200	Weak transcription	Rectal Mucosa Donor 29	rectum

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