Variant report

Variant	rs10196177
Chromosome Location	chr2:77085752-77085753
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10176768	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1034140	1.00[CEU][hapmap];0.83[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10520166	1.00[CEU][hapmap];0.86[CHD][hapmap];0.83[JPT][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10520169	0.91[GIH][hapmap]
rs12052574	0.83[EUR][1000 genomes]
rs12620975	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13398751	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.83[JPT][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17013242	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.83[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17013248	0.88[MEX][hapmap];0.81[TSI][hapmap];0.86[EUR][1000 genomes]
rs17013302	0.91[GIH][hapmap]
rs17013306	0.91[GIH][hapmap]
rs2020235	0.84[AFR][1000 genomes]
rs4277548	1.00[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60921880	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6750897	0.82[JPT][hapmap]
rs72819253	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7558600	0.82[ASW][hapmap];0.85[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs7580390	0.86[JPT][hapmap]
rs7607019	0.88[ASW][hapmap];0.82[JPT][hapmap];0.87[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005091	chr2:77009508-77112403	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1006086	chr2:77031163-77128651	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv874321	chr2:77031247-77113949	Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv874322	chr2:77031247-77209750	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1007648	chr2:77034405-77128651	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2752990	chr2:77038541-77217310	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv874323	chr2:77048896-77113949	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv874324	chr2:77048896-77201916	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv874325	chr2:77053916-77113949	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv458274	chr2:77055883-77113949	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv582250	chr2:77055883-77113949	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv874326	chr2:77055883-77148261	Enhancers Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv582251	chr2:77055883-77154515	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv874327	chr2:77085752-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77076200-77088600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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