Variant report

Variant	rs17013306
Chromosome Location	chr2:77121438-77121439
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10084200	0.81[EUR][1000 genomes]
rs10189940	1.00[TSI][hapmap]
rs10196177	0.91[GIH][hapmap]
rs10520168	0.81[JPT][hapmap]
rs10520169	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11892618	1.00[YRI][hapmap]
rs11898331	1.00[YRI][hapmap]
rs11902057	1.00[YRI][hapmap]
rs11904529	1.00[YRI][hapmap]
rs13388552	0.87[CHB][hapmap]
rs13406560	0.86[CHB][hapmap]
rs1348828	0.83[CHB][hapmap]
rs1374393	1.00[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap]
rs1374394	0.87[CHB][hapmap]
rs1446702	0.81[CHB][hapmap]
rs17013248	0.83[CHB][hapmap]
rs17013296	0.82[JPT][hapmap]
rs17013302	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs17013313	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17013338	0.89[CEU][hapmap]
rs17013359	0.81[EUR][1000 genomes]
rs17013364	1.00[CEU][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17013366	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17013420	0.80[CEU][hapmap];0.85[CHB][hapmap]
rs17013458	1.00[CEU][hapmap];0.83[CHB][hapmap];0.86[CHD][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs17013599	0.81[CHB][hapmap]
rs17013615	0.83[CHB][hapmap]
rs17040500	0.83[CHB][hapmap]
rs17089	0.83[CHB][hapmap]
rs1867891	0.89[CEU][hapmap]
rs1921625	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap]
rs1921626	1.00[TSI][hapmap]
rs1921627	0.81[JPT][hapmap]
rs1929453	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1950122	0.90[CEU][hapmap];0.87[CHB][hapmap];0.82[CHD][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4853290	0.82[CHB][hapmap]
rs6547113	0.87[CHB][hapmap]
rs6706194	0.86[CHB][hapmap]
rs6716081	1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs7604936	0.81[CHB][hapmap]
rs914389	1.00[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs985234	0.91[JPT][hapmap]
rs985750	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006086	chr2:77031163-77128651	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv874322	chr2:77031247-77209750	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1007648	chr2:77034405-77128651	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2752990	chr2:77038541-77217310	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv874324	chr2:77048896-77201916	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv874326	chr2:77055883-77148261	Enhancers Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv582251	chr2:77055883-77154515	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv874327	chr2:77085752-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv874328	chr2:77096124-77196122	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv874329	chr2:77096124-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	esv1819739	chr2:77103474-77162163	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv874330	chr2:77103719-77209750	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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