Variant report

Variant	rs6716081
Chromosome Location	chr2:77166721-77166722
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10084200	0.86[EUR][1000 genomes]
rs10189940	1.00[TSI][hapmap]
rs10520169	1.00[CEU][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12614704	1.00[ASW][hapmap]
rs13388552	0.87[CHB][hapmap]
rs1348828	0.82[CHB][hapmap]
rs1374393	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[YRI][hapmap]
rs1374394	0.87[CHB][hapmap]
rs17013302	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs17013306	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs17013313	1.00[CEU][hapmap]
rs17013338	0.89[CEU][hapmap]
rs17013359	0.86[EUR][1000 genomes]
rs17013364	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17013366	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17013420	0.80[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap]
rs17013458	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];1.00[LWK][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs17013615	0.82[CHB][hapmap]
rs17040500	0.82[CHB][hapmap]
rs17089	0.82[CHB][hapmap]
rs1867891	0.89[CEU][hapmap]
rs1921625	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs1921626	1.00[TSI][hapmap];1.00[YRI][hapmap]
rs1929453	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1950122	0.90[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2178573	0.85[EUR][1000 genomes]
rs58758157	0.84[EUR][1000 genomes]
rs58852194	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6547113	0.81[CHB][hapmap]
rs6706194	0.80[CHB][hapmap]
rs72821289	0.85[EUR][1000 genomes]
rs72821295	0.85[EUR][1000 genomes]
rs7564533	1.00[YRI][hapmap];0.89[EUR][1000 genomes]
rs914389	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9751593	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874322	chr2:77031247-77209750	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv2752990	chr2:77038541-77217310	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv874324	chr2:77048896-77201916	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv874327	chr2:77085752-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv874328	chr2:77096124-77196122	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv874329	chr2:77096124-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv874330	chr2:77103719-77209750	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77146600-77167400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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