Variant report

Variant	rs914389
Chromosome Location	chr2:77122673-77122674
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:77116319..77118650-chr2:77122168..77124589,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10084200	0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs10190210	0.84[JPT][hapmap]
rs10520168	0.95[JPT][hapmap]
rs10520169	1.00[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13388552	0.96[CHB][hapmap]
rs13389562	0.87[CHB][hapmap]
rs1348828	0.87[CHB][hapmap]
rs1374393	1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap]
rs1374394	0.95[CHB][hapmap]
rs1446717	0.86[CHB][hapmap]
rs17013302	1.00[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap]
rs17013306	1.00[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap]
rs17013313	1.00[CEU][hapmap];0.84[CHB][hapmap];0.87[JPT][hapmap]
rs17013338	0.90[CEU][hapmap]
rs17013359	0.83[EUR][1000 genomes]
rs17013364	1.00[CEU][hapmap];0.87[CHB][hapmap];0.81[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17013366	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17013420	0.82[CEU][hapmap];0.80[CHB][hapmap];0.86[JPT][hapmap]
rs17013458	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap]
rs17013615	0.91[CHB][hapmap]
rs17040500	0.91[CHB][hapmap]
rs17089	0.91[CHB][hapmap]
rs1867891	0.90[CEU][hapmap]
rs1921625	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs1929453	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1950122	0.90[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2178573	0.81[EUR][1000 genomes]
rs4853290	0.86[CHB][hapmap]
rs6547113	0.91[CHB][hapmap]
rs6706194	0.91[CHB][hapmap]
rs6716081	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72821289	0.81[EUR][1000 genomes]
rs72821295	0.81[EUR][1000 genomes]
rs7604637	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006086	chr2:77031163-77128651	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv874322	chr2:77031247-77209750	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1007648	chr2:77034405-77128651	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2752990	chr2:77038541-77217310	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv874324	chr2:77048896-77201916	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv874326	chr2:77055883-77148261	Enhancers Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv582251	chr2:77055883-77154515	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv874327	chr2:77085752-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv874328	chr2:77096124-77196122	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv874329	chr2:77096124-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	esv1819739	chr2:77103474-77162163	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv874330	chr2:77103719-77209750	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77122400-77123200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr2:77122400-77123200	Enhancers	HepG2	liver

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