Variant report

Variant	rs1446717
Chromosome Location	chr2:77211342-77211343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs12713886	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12713890	0.89[CEU][hapmap];0.89[GIH][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes]
rs12713891	0.91[EUR][1000 genomes]
rs12987907	0.82[JPT][hapmap]
rs12992834	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs13021476	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs13033902	0.95[CEU][hapmap];0.88[GIH][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs13034088	0.95[CEU][hapmap];0.94[GIH][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap];0.86[EUR][1000 genomes]
rs13388552	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13389562	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13397044	0.85[CEU][hapmap];0.94[GIH][hapmap];0.80[MEX][hapmap]
rs13406560	0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1348828	0.90[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1348829	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1374390	0.82[JPT][hapmap]
rs1374392	1.00[CEU][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs1374393	0.91[CHB][hapmap]
rs1374394	0.95[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap]
rs1446689	0.85[CEU][hapmap];0.91[GIH][hapmap]
rs1446690	0.85[CEU][hapmap]
rs1446694	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs1446700	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs1446702	0.81[JPT][hapmap]
rs1446704	0.82[JPT][hapmap]
rs1446706	0.90[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1446713	0.91[EUR][1000 genomes]
rs1446714	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs1446718	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs1446720	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1542187	0.90[CEU][hapmap];0.86[GIH][hapmap];0.89[TSI][hapmap]
rs17013420	0.84[CHB][hapmap]
rs17013458	0.95[CHB][hapmap];0.83[CHD][hapmap]
rs17013592	0.82[JPT][hapmap]
rs17013595	0.82[JPT][hapmap]
rs17013599	0.81[JPT][hapmap]
rs17013615	0.90[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17040496	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs17040500	0.90[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];0.81[JPT][hapmap];0.94[MEX][hapmap];0.96[TSI][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17089	0.90[CEU][hapmap];0.86[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.87[JPT][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap];0.90[EUR][1000 genomes]
rs1838879	0.90[EUR][1000 genomes]
rs1900342	0.85[CEU][hapmap]
rs1921625	0.86[CHB][hapmap]
rs1950122	0.91[CHB][hapmap]
rs1982341	0.85[CEU][hapmap]
rs2044485	0.90[CEU][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs2197603	0.83[JPT][hapmap]
rs34287182	0.83[EUR][1000 genomes]
rs34577944	0.91[EUR][1000 genomes]
rs35458070	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4510248	0.85[CEU][hapmap];0.97[GIH][hapmap]
rs4853290	0.90[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58758157	0.84[ASN][1000 genomes]
rs58852194	0.84[ASN][1000 genomes]
rs58936967	0.97[EUR][1000 genomes]
rs6547106	0.85[CEU][hapmap];0.89[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs6547107	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs6547108	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs6547109	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs6547111	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs6547113	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6547119	0.97[GIH][hapmap];0.85[MEX][hapmap]
rs6706194	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6724799	0.87[EUR][1000 genomes]
rs6737296	1.00[CEU][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs6739222	0.83[JPT][hapmap]
rs6741095	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6750979	0.86[CEU][hapmap];0.84[GIH][hapmap];0.86[TSI][hapmap];0.91[EUR][1000 genomes]
rs6758707	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs72823154	0.97[EUR][1000 genomes]
rs7556871	0.91[EUR][1000 genomes]
rs7561189	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[TSI][hapmap]
rs7569919	0.93[EUR][1000 genomes]
rs7569994	0.91[EUR][1000 genomes]
rs7591186	0.81[JPT][hapmap]
rs7595678	0.90[CEU][hapmap];0.97[GIH][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap];0.89[EUR][1000 genomes]
rs7604936	0.81[JPT][hapmap]
rs914389	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752990	chr2:77038541-77217310	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77206600-77211600	Weak transcription	Fetal Lung	lung
2	chr2:77206800-77211600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:77210600-77214200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:77210600-77214200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr2:77210800-77212200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr2:77211000-77214200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr2:77211200-77212400	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links