Variant report

Variant	rs1374394
Chromosome Location	chr2:77221590-77221591
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10520169	0.87[CHB][hapmap]
rs12713886	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12713890	0.94[CEU][hapmap];0.89[GIH][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes]
rs12713891	0.88[EUR][1000 genomes]
rs12987907	0.82[JPT][hapmap]
rs12992834	0.81[JPT][hapmap]
rs13021476	0.95[CEU][hapmap];0.94[EUR][1000 genomes]
rs13033902	0.89[CEU][hapmap];0.81[CHD][hapmap];0.88[GIH][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13034088	0.89[CEU][hapmap];0.81[CHD][hapmap];0.94[GIH][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs13388552	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13389562	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs13397044	0.94[GIH][hapmap]
rs13406560	0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1348828	0.95[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1348829	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1374390	0.82[JPT][hapmap]
rs1374392	0.95[CEU][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs1374393	1.00[CHB][hapmap]
rs1446689	0.91[GIH][hapmap]
rs1446694	0.84[CEU][hapmap];0.86[CHB][hapmap];0.86[EUR][1000 genomes]
rs1446700	0.86[JPT][hapmap]
rs1446702	0.81[JPT][hapmap]
rs1446704	0.82[JPT][hapmap]
rs1446706	0.95[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1446713	0.88[EUR][1000 genomes]
rs1446714	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs1446717	0.95[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1446718	0.95[CEU][hapmap];0.94[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs1446720	0.95[CEU][hapmap];0.94[EUR][1000 genomes]
rs1542187	0.95[CEU][hapmap];0.86[GIH][hapmap];0.89[TSI][hapmap]
rs17013302	0.87[CHB][hapmap]
rs17013306	0.87[CHB][hapmap]
rs17013313	0.87[CHB][hapmap]
rs17013364	0.83[CHB][hapmap]
rs17013420	0.95[CHB][hapmap]
rs17013458	0.95[CHB][hapmap];0.86[CHD][hapmap]
rs17013592	0.82[JPT][hapmap]
rs17013595	0.82[JPT][hapmap]
rs17013599	0.81[JPT][hapmap]
rs17013615	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.90[MEX][hapmap];0.96[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17040496	0.95[CEU][hapmap];0.94[EUR][1000 genomes]
rs17040500	0.95[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.94[GIH][hapmap];0.81[JPT][hapmap];0.85[MEX][hapmap];0.96[TSI][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17089	0.95[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.87[JPT][hapmap];0.86[MEX][hapmap];0.96[TSI][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1838879	0.92[EUR][1000 genomes]
rs1921625	0.95[CHB][hapmap]
rs1950122	1.00[CHB][hapmap];0.82[CHD][hapmap]
rs2044485	0.85[CEU][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs2197603	0.83[JPT][hapmap]
rs34287182	0.80[EUR][1000 genomes]
rs34577944	0.93[EUR][1000 genomes]
rs35458070	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4510248	0.97[GIH][hapmap]
rs4853290	0.95[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58758157	0.83[ASN][1000 genomes]
rs58852194	0.83[ASN][1000 genomes]
rs58936967	0.94[EUR][1000 genomes]
rs6547106	0.80[CEU][hapmap];0.89[GIH][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs6547107	0.95[CEU][hapmap];0.94[EUR][1000 genomes]
rs6547108	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs6547109	0.95[CEU][hapmap];0.94[EUR][1000 genomes]
rs6547111	0.95[CEU][hapmap];0.94[EUR][1000 genomes]
rs6547113	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6547119	0.97[GIH][hapmap]
rs6706194	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6716081	0.87[CHB][hapmap]
rs6724799	0.90[EUR][1000 genomes]
rs6737296	0.95[CEU][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs6739222	0.83[JPT][hapmap]
rs6741095	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6750979	0.81[CEU][hapmap];0.84[GIH][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes]
rs6758707	0.94[CEU][hapmap];0.94[EUR][1000 genomes]
rs72823154	0.94[EUR][1000 genomes]
rs7556871	0.88[EUR][1000 genomes]
rs7561189	0.95[CEU][hapmap];0.94[GIH][hapmap];1.00[TSI][hapmap]
rs7569919	0.96[EUR][1000 genomes]
rs7569994	0.94[EUR][1000 genomes]
rs7591186	0.81[JPT][hapmap]
rs7595678	0.84[CEU][hapmap];0.97[GIH][hapmap];0.86[MEX][hapmap];0.96[TSI][hapmap];0.86[EUR][1000 genomes]
rs7604936	0.81[JPT][hapmap]
rs914389	0.95[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv519950	chr2:77213103-77256291	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv829468	chr2:77216448-77224533	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
5	nsv961764	chr2:77216571-77228053	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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