Variant report

Variant	rs7604936
Chromosome Location	chr2:77236377-77236378
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MRPL19-4	chr2:77236150-77236917	ENSG00000234653.1
2	lnc-MRPL19-4	chr2:77236150-77236914	NR_110284

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10183619	0.92[EUR][1000 genomes]
rs10183642	0.92[EUR][1000 genomes]
rs10186912	0.92[EUR][1000 genomes]
rs10190179	0.93[EUR][1000 genomes]
rs10190198	0.93[EUR][1000 genomes]
rs10190443	0.92[EUR][1000 genomes]
rs10196630	0.92[EUR][1000 genomes]
rs10196749	0.90[EUR][1000 genomes]
rs10196758	0.91[EUR][1000 genomes]
rs10196801	0.92[EUR][1000 genomes]
rs10196895	0.92[EUR][1000 genomes]
rs10196939	0.92[EUR][1000 genomes]
rs10201530	0.86[EUR][1000 genomes]
rs10520169	0.81[CHB][hapmap]
rs12621674	0.91[EUR][1000 genomes]
rs12987907	0.90[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12992834	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13013784	1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13406560	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs13427438	0.92[EUR][1000 genomes]
rs13427514	0.92[EUR][1000 genomes]
rs13430336	0.80[JPT][hapmap]
rs1345136	0.89[EUR][1000 genomes]
rs1348828	0.87[JPT][hapmap]
rs1348831	0.94[EUR][1000 genomes]
rs1374388	0.93[EUR][1000 genomes]
rs1374389	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1374390	0.91[CHB][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1374394	0.81[JPT][hapmap]
rs1446693	0.88[EUR][1000 genomes]
rs1446694	0.80[JPT][hapmap]
rs1446695	0.86[EUR][1000 genomes]
rs1446697	0.93[EUR][1000 genomes]
rs1446698	0.94[EUR][1000 genomes]
rs1446700	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1446701	0.96[EUR][1000 genomes]
rs1446702	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1446703	0.97[EUR][1000 genomes]
rs1446704	0.90[CHB][hapmap];0.91[JPT][hapmap];0.87[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1446705	0.96[EUR][1000 genomes]
rs1446706	0.92[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs1446707	0.94[EUR][1000 genomes]
rs1446710	0.85[EUR][1000 genomes]
rs1446712	0.85[EUR][1000 genomes]
rs1446717	0.81[JPT][hapmap]
rs1470504	0.91[EUR][1000 genomes]
rs1470505	0.92[EUR][1000 genomes]
rs1470506	0.92[EUR][1000 genomes]
rs1470507	0.90[EUR][1000 genomes]
rs1470508	0.92[EUR][1000 genomes]
rs1584235	0.91[EUR][1000 genomes]
rs1584236	0.90[EUR][1000 genomes]
rs1584237	0.92[EUR][1000 genomes]
rs17013302	0.81[CHB][hapmap]
rs17013306	0.81[CHB][hapmap]
rs17013313	0.82[CHB][hapmap]
rs17013592	0.90[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17013595	0.90[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17013599	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17013615	0.91[JPT][hapmap];1.00[YRI][hapmap]
rs17040500	1.00[JPT][hapmap]
rs17089	0.87[JPT][hapmap]
rs1838880	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1838881	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2028913	0.91[EUR][1000 genomes]
rs2121409	0.93[EUR][1000 genomes]
rs2121410	0.92[EUR][1000 genomes]
rs2121411	0.92[EUR][1000 genomes]
rs2197603	0.87[CHB][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2860937	0.92[EUR][1000 genomes]
rs2860938	0.94[EUR][1000 genomes]
rs2901812	0.90[EUR][1000 genomes]
rs34372910	0.91[EUR][1000 genomes]
rs34632326	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35038238	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35659577	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4143794	0.85[EUR][1000 genomes]
rs4143796	0.85[EUR][1000 genomes]
rs4853286	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4853287	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4853288	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4853289	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4853290	0.92[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs4853291	0.93[EUR][1000 genomes]
rs56314043	0.90[EUR][1000 genomes]
rs6547110	0.88[EUR][1000 genomes]
rs6547114	0.94[EUR][1000 genomes]
rs6547115	0.92[EUR][1000 genomes]
rs6547116	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6547117	0.91[CHB][hapmap];0.87[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6547118	0.91[CHB][hapmap];0.87[JPT][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6718391	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6718440	0.92[EUR][1000 genomes]
rs6732462	0.92[EUR][1000 genomes]
rs6739222	0.82[CHB][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6743454	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs727000	0.92[EUR][1000 genomes]
rs7561361	0.91[EUR][1000 genomes]
rs7563917	0.88[EUR][1000 genomes]
rs7569624	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7591186	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7597923	0.96[EUR][1000 genomes]
rs7605187	0.96[EUR][1000 genomes]
rs765572	0.91[EUR][1000 genomes]
rs985234	0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv519950	chr2:77213103-77256291	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv997284	chr2:77233426-77303198	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1007408	chr2:77235194-77255152	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77232000-77245600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:77232600-77238200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:77232800-77238000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:77233600-77237200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr2:77233800-77236800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:77233800-77237000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr2:77233800-77237000	Enhancers	HUVEC	blood vessel
8	chr2:77234000-77237600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr2:77234200-77239000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr2:77234400-77238200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr2:77234600-77237000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr2:77234600-77237600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr2:77234800-77236600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr2:77235000-77237800	Enhancers	Fetal Brain Male	brain
15	chr2:77235200-77236800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr2:77235600-77236800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr2:77235600-77236800	Enhancers	Brain Anterior Caudate	brain
18	chr2:77235600-77237000	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr2:77235800-77236400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr2:77235800-77236400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr2:77235800-77237000	Enhancers	H1 Cell Line	embryonic stem cell
22	chr2:77235800-77237000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr2:77236000-77236400	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr2:77236000-77236600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr2:77236000-77239600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr2:77236200-77236400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr2:77236200-77236400	Enhancers	Fetal Lung	lung
28	chr2:77236200-77237000	Enhancers	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links