Variant report

Variant	rs985234
Chromosome Location	chr2:77116764-77116765
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:77116319..77118650-chr2:77122168..77124589,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10520168	0.90[CEU][hapmap];0.82[JPT][hapmap]
rs10520169	0.91[JPT][hapmap]
rs12987907	0.87[CHB][hapmap]
rs13385519	0.82[EUR][1000 genomes]
rs13385839	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs13393238	0.87[CEU][hapmap];0.89[EUR][1000 genomes]
rs13406560	0.91[CHB][hapmap]
rs13416719	0.85[CEU][hapmap]
rs13423635	0.86[CEU][hapmap]
rs1374390	0.87[CHB][hapmap]
rs1446702	0.87[CHB][hapmap]
rs1446704	0.87[CHB][hapmap]
rs17013276	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs17013296	0.86[CEU][hapmap];0.81[JPT][hapmap]
rs17013302	0.91[JPT][hapmap]
rs17013306	0.91[JPT][hapmap]
rs17013313	0.87[JPT][hapmap]
rs17013340	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs17013341	0.87[EUR][1000 genomes]
rs17013455	0.81[CEU][hapmap]
rs17013592	0.87[CHB][hapmap]
rs17013595	0.87[CHB][hapmap]
rs17013599	0.87[CHB][hapmap]
rs1921627	0.80[JPT][hapmap];0.86[EUR][1000 genomes]
rs1921628	0.86[EUR][1000 genomes]
rs1929448	0.85[EUR][1000 genomes]
rs1929452	0.87[CEU][hapmap]
rs2065375	0.86[CEU][hapmap]
rs2178574	0.87[CEU][hapmap];0.89[EUR][1000 genomes]
rs2197603	1.00[CHB][hapmap]
rs4277549	0.81[EUR][1000 genomes]
rs60439095	0.88[EUR][1000 genomes]
rs62170343	0.86[EUR][1000 genomes]
rs6547117	0.95[CHB][hapmap]
rs6547118	0.95[CHB][hapmap]
rs6736181	0.86[CEU][hapmap]
rs6739222	0.95[CHB][hapmap]
rs6740369	0.86[EUR][1000 genomes]
rs6751097	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs721390	0.83[EUR][1000 genomes]
rs72823122	0.81[EUR][1000 genomes]
rs7592470	0.86[CEU][hapmap]
rs7592608	0.87[CEU][hapmap]
rs7603852	0.82[EUR][1000 genomes]
rs7604637	0.81[CEU][hapmap];0.87[EUR][1000 genomes]
rs7604936	0.87[CHB][hapmap]
rs953854	0.87[CEU][hapmap];0.92[EUR][1000 genomes]
rs985750	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006086	chr2:77031163-77128651	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv874322	chr2:77031247-77209750	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1007648	chr2:77034405-77128651	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2752990	chr2:77038541-77217310	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv874324	chr2:77048896-77201916	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv874326	chr2:77055883-77148261	Enhancers Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv582251	chr2:77055883-77154515	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv874327	chr2:77085752-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv874328	chr2:77096124-77196122	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv874329	chr2:77096124-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	esv1819739	chr2:77103474-77162163	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv874330	chr2:77103719-77209750	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77116400-77117000	Enhancers	Pancreatic Islets	Pancreatic Islet

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