Variant report

Variant	rs17013341
Chromosome Location	chr2:77147864-77147865
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10177731	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10187466	0.94[CHB][hapmap]
rs10191141	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs10192262	0.94[CHB][hapmap]
rs10520176	0.89[CHB][hapmap]
rs11126576	0.94[CHB][hapmap]
rs11896560	0.89[CHB][hapmap]
rs12621674	0.94[CHB][hapmap]
rs13385651	0.94[CHB][hapmap]
rs13385727	0.94[CHB][hapmap]
rs13385839	0.94[CHB][hapmap];0.91[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13393238	0.94[CHB][hapmap];0.91[JPT][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13422716	0.94[CHB][hapmap]
rs13423635	0.81[JPT][hapmap]
rs1446710	0.94[CHB][hapmap]
rs1470503	0.94[CHB][hapmap]
rs17013338	0.87[JPT][hapmap]
rs17013340	0.94[CHB][hapmap];0.91[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17013455	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs1921627	0.87[EUR][1000 genomes]
rs1921628	0.87[EUR][1000 genomes]
rs1929448	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1929452	0.94[CHB][hapmap];0.91[JPT][hapmap]
rs1997468	0.94[CHB][hapmap]
rs2065375	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs2178574	0.94[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2860872	0.89[CHB][hapmap]
rs2860934	0.89[CHB][hapmap]
rs4143794	0.94[CHB][hapmap]
rs4143796	0.94[CHB][hapmap]
rs4853283	0.94[CHB][hapmap]
rs60439095	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62170284	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62170343	0.87[EUR][1000 genomes]
rs6547104	0.89[CHB][hapmap]
rs6719689	0.94[CHB][hapmap]
rs6736181	0.81[JPT][hapmap]
rs6740369	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6751097	0.94[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823122	0.81[EUR][1000 genomes]
rs7422204	0.89[CHB][hapmap]
rs7563917	0.89[CHB][hapmap]
rs7586363	0.94[CHB][hapmap]
rs7592470	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs7592608	0.94[CHB][hapmap];0.91[JPT][hapmap]
rs7604637	0.88[EUR][1000 genomes]
rs9309508	0.94[CHB][hapmap]
rs9309509	0.94[CHB][hapmap]
rs953854	0.94[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs985234	0.87[EUR][1000 genomes]
rs992313	0.94[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874322	chr2:77031247-77209750	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv2752990	chr2:77038541-77217310	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv874324	chr2:77048896-77201916	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv874326	chr2:77055883-77148261	Enhancers Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv582251	chr2:77055883-77154515	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv874327	chr2:77085752-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv874328	chr2:77096124-77196122	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv874329	chr2:77096124-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv1819739	chr2:77103474-77162163	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv874330	chr2:77103719-77209750	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77146600-77167400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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