Variant report

Variant	rs10520176
Chromosome Location	chr2:77217310-77217311
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10177731	0.89[CHB][hapmap]
rs10187466	0.94[CHB][hapmap]
rs10191141	0.94[CHB][hapmap]
rs10192262	0.94[CHB][hapmap]
rs10198799	0.82[YRI][hapmap]
rs10201530	0.82[YRI][hapmap]
rs11126575	0.80[CHB][hapmap]
rs11126576	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs11896560	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs1252021	0.83[CHB][hapmap];1.00[YRI][hapmap]
rs12621674	0.94[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs13385651	0.94[CHB][hapmap];0.82[YRI][hapmap]
rs13385727	0.94[CHB][hapmap]
rs13385839	0.94[CHB][hapmap]
rs13393238	0.94[CHB][hapmap]
rs13416719	0.82[CHB][hapmap]
rs13422716	0.94[CHB][hapmap]
rs1446710	0.94[CHB][hapmap];0.83[CHD][hapmap];0.81[MEX][hapmap]
rs1470503	0.94[CHB][hapmap]
rs1470507	0.87[ASN][1000 genomes]
rs1584236	0.86[ASN][1000 genomes]
rs17013340	0.94[CHB][hapmap]
rs17013341	0.89[CHB][hapmap]
rs17013455	0.94[CHB][hapmap]
rs1929452	0.94[CHB][hapmap]
rs1997468	0.94[CHB][hapmap]
rs2065375	0.94[CHB][hapmap]
rs2178574	0.94[CHB][hapmap]
rs2860872	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs2860934	0.84[CHB][hapmap]
rs4143794	0.94[CHB][hapmap]
rs4143796	0.94[CHB][hapmap];0.83[CHD][hapmap]
rs4853283	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs56314043	0.87[ASN][1000 genomes]
rs6547104	0.89[CHB][hapmap];0.82[YRI][hapmap]
rs6547110	0.86[ASN][1000 genomes]
rs6719689	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs6751097	0.94[CHB][hapmap]
rs727000	0.81[MEX][hapmap]
rs7422204	0.88[CHB][hapmap]
rs7563917	0.89[CHB][hapmap];0.81[JPT][hapmap];0.81[MEX][hapmap];0.84[ASN][1000 genomes]
rs7586363	0.88[CEU][hapmap];0.94[CHB][hapmap]
rs7592470	0.94[CHB][hapmap]
rs7592608	0.94[CHB][hapmap]
rs7597923	0.81[MEX][hapmap]
rs9309508	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs9309509	0.94[CHB][hapmap]
rs953854	0.94[CHB][hapmap]
rs992313	0.94[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752990	chr2:77038541-77217310	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv519950	chr2:77213103-77256291	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv829468	chr2:77216448-77224533	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
6	nsv961764	chr2:77216571-77228053	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77214000-77220400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:77214200-77217400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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