Variant report

Variant	rs2860872
Chromosome Location	chr2:77109127-77109128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10170973	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10177731	0.89[CHB][hapmap]
rs10187466	0.94[CHB][hapmap];0.89[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10191141	0.94[CHB][hapmap]
rs10192262	0.80[CEU][hapmap];0.94[CHB][hapmap];0.91[GIH][hapmap];0.87[JPT][hapmap];0.81[MEX][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10520176	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs11126575	0.87[CEU][hapmap];0.80[CHB][hapmap];0.84[JPT][hapmap]
rs11126576	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11896560	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11896587	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12621674	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs13385651	0.94[CHB][hapmap];0.89[JPT][hapmap]
rs13385727	0.94[CHB][hapmap];0.89[JPT][hapmap]
rs13385839	0.94[CHB][hapmap]
rs13393238	0.94[CHB][hapmap]
rs13422716	0.94[CHB][hapmap];0.91[GIH][hapmap];0.87[JPT][hapmap];0.81[MEX][hapmap]
rs1446710	0.94[CHB][hapmap];0.89[GIH][hapmap];0.87[JPT][hapmap]
rs1470503	0.83[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap]
rs17013340	0.94[CHB][hapmap]
rs17013341	0.89[CHB][hapmap]
rs17013455	0.94[CHB][hapmap]
rs1929452	0.94[CHB][hapmap]
rs1997468	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs2044485	0.87[JPT][hapmap]
rs2065375	0.94[CHB][hapmap]
rs2178574	0.94[CHB][hapmap]
rs2860934	0.84[CHB][hapmap]
rs4143794	0.94[CHB][hapmap];0.89[JPT][hapmap]
rs4143796	0.94[CHB][hapmap];0.89[GIH][hapmap];0.87[JPT][hapmap]
rs4853283	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6547104	0.83[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6719689	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6751097	0.94[CHB][hapmap]
rs7422204	0.88[CHB][hapmap];0.89[GIH][hapmap]
rs7563917	0.89[CHB][hapmap];0.86[GIH][hapmap];0.93[JPT][hapmap]
rs7586363	0.83[CHB][hapmap]
rs7592470	0.94[CHB][hapmap]
rs7592608	0.94[CHB][hapmap]
rs7601256	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs7602571	0.88[EUR][1000 genomes]
rs9309508	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9309509	0.80[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs953854	0.94[CHB][hapmap]
rs992313	0.88[CEU][hapmap];0.94[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005091	chr2:77009508-77112403	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1006086	chr2:77031163-77128651	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv874321	chr2:77031247-77113949	Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv874322	chr2:77031247-77209750	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1007648	chr2:77034405-77128651	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2752990	chr2:77038541-77217310	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv874323	chr2:77048896-77113949	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv874324	chr2:77048896-77201916	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv874325	chr2:77053916-77113949	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv458274	chr2:77055883-77113949	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv582250	chr2:77055883-77113949	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv874326	chr2:77055883-77148261	Enhancers Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv582251	chr2:77055883-77154515	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv874327	chr2:77085752-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	nsv525625	chr2:77096124-77113949	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv874328	chr2:77096124-77196122	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	nsv874329	chr2:77096124-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
18	esv1819739	chr2:77103474-77162163	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
19	nsv874330	chr2:77103719-77209750	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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