Variant report

Variant	rs7601256
Chromosome Location	chr2:77184383-77184384
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10170973	0.89[CEU][hapmap];0.81[CHB][hapmap];0.83[EUR][1000 genomes]
rs10183619	0.85[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs10183642	0.81[EUR][1000 genomes]
rs10186912	0.82[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs10187466	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs10190510	0.85[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs10192262	0.89[CEU][hapmap];0.95[EUR][1000 genomes]
rs10193309	0.85[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs10196630	0.81[EUR][1000 genomes]
rs10196758	0.83[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs10196801	0.85[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs10196895	0.82[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes]
rs10196939	0.85[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs11126575	0.96[CEU][hapmap]
rs11126576	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs11896560	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs11896587	0.96[EUR][1000 genomes]
rs12621674	0.84[CEU][hapmap]
rs13385651	0.93[CEU][hapmap]
rs13385727	0.93[CEU][hapmap]
rs13422716	0.92[CEU][hapmap]
rs13427438	0.81[EUR][1000 genomes]
rs13427514	0.85[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs1446710	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs1446712	0.86[EUR][1000 genomes]
rs1446724	0.84[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs1446725	0.84[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs1470503	1.00[CEU][hapmap]
rs1470504	0.84[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs1470505	0.85[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs1470506	0.82[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs1470507	0.80[EUR][1000 genomes]
rs1470508	0.85[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs1584235	0.82[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs1584236	0.80[EUR][1000 genomes]
rs1584237	0.85[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs1596913	0.85[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs17013296	1.00[CHB][hapmap]
rs1921627	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs1921628	0.81[ASN][1000 genomes]
rs1997468	0.89[CEU][hapmap]
rs2121410	0.85[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs2121411	0.85[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs2197603	0.82[JPT][hapmap]
rs2860872	0.83[CEU][hapmap]
rs2860937	0.81[EUR][1000 genomes]
rs34372910	0.80[EUR][1000 genomes]
rs4143794	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs4143796	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs4324338	0.85[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs4853283	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs56314043	0.80[EUR][1000 genomes]
rs62170343	0.81[ASN][1000 genomes]
rs6547104	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs6547110	0.82[EUR][1000 genomes]
rs6719689	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs6739222	0.82[JPT][hapmap]
rs6750897	0.81[CHB][hapmap]
rs7422204	0.88[CEU][hapmap]
rs7558600	0.81[CHB][hapmap]
rs7561361	0.80[EUR][1000 genomes]
rs7563917	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs7580390	0.81[CHB][hapmap]
rs7602571	0.81[EUR][1000 genomes]
rs7604637	0.91[CHB][hapmap]
rs7607019	0.81[CHB][hapmap]
rs9309508	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs9309509	0.89[CEU][hapmap];0.95[EUR][1000 genomes]
rs985750	0.95[CHB][hapmap]
rs992313	0.96[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874322	chr2:77031247-77209750	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv2752990	chr2:77038541-77217310	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv874324	chr2:77048896-77201916	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv874327	chr2:77085752-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv874328	chr2:77096124-77196122	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv874329	chr2:77096124-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv874330	chr2:77103719-77209750	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv818054	chr2:77172693-77192765	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1008307	chr2:77174354-77197565	Weak transcription Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77181600-77185600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr2:77182200-77186800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr2:77183000-77185600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr2:77183000-77185800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr2:77183000-77186200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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