Variant report

Variant	rs10170973
Chromosome Location	chr2:77097178-77097179
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10183619	0.86[CHB][hapmap]
rs10186912	0.86[CHB][hapmap]
rs10187466	0.85[CEU][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10190510	0.85[CHB][hapmap]
rs10192262	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10193309	0.86[CHB][hapmap]
rs10196758	0.83[CHB][hapmap]
rs10196801	0.86[CHB][hapmap]
rs10196895	0.89[CHB][hapmap]
rs10196939	0.86[CHB][hapmap]
rs11126575	0.93[CEU][hapmap]
rs11126576	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11896560	0.93[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11896587	0.85[EUR][1000 genomes]
rs13385651	0.82[CEU][hapmap]
rs13385727	0.82[CEU][hapmap]
rs13422716	0.81[CEU][hapmap]
rs13427514	0.89[CHB][hapmap]
rs1446710	0.81[CEU][hapmap]
rs1446724	0.90[CHB][hapmap]
rs1446725	0.90[CHB][hapmap]
rs1470503	0.89[CEU][hapmap]
rs1470504	0.90[CHB][hapmap]
rs1470505	0.85[CHB][hapmap]
rs1470506	0.87[CHB][hapmap]
rs1470508	0.86[CHB][hapmap]
rs1584235	0.85[CHB][hapmap]
rs1584237	0.86[CHB][hapmap]
rs1596913	0.86[CHB][hapmap]
rs17013296	0.90[CHB][hapmap]
rs1921627	0.90[CHB][hapmap]
rs1997468	0.85[CEU][hapmap]
rs2121410	0.86[CHB][hapmap]
rs2121411	0.85[CHB][hapmap]
rs2860872	0.96[CEU][hapmap]
rs4143794	0.81[CEU][hapmap]
rs4143796	0.81[CEU][hapmap]
rs4324338	0.84[CHB][hapmap]
rs4853283	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6547104	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6719689	0.93[CEU][hapmap]
rs6750897	0.95[CHB][hapmap]
rs721390	0.80[CHB][hapmap]
rs7558600	0.95[CHB][hapmap]
rs7580390	0.95[CHB][hapmap]
rs7601256	0.89[CEU][hapmap];0.81[CHB][hapmap];0.83[EUR][1000 genomes]
rs7602571	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7607019	0.95[CHB][hapmap]
rs9309508	0.93[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9309509	0.86[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs985750	0.86[CHB][hapmap]
rs992313	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005091	chr2:77009508-77112403	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1006086	chr2:77031163-77128651	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv874321	chr2:77031247-77113949	Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv874322	chr2:77031247-77209750	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1007648	chr2:77034405-77128651	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2752990	chr2:77038541-77217310	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv874323	chr2:77048896-77113949	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv874324	chr2:77048896-77201916	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv874325	chr2:77053916-77113949	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv458274	chr2:77055883-77113949	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv582250	chr2:77055883-77113949	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv874326	chr2:77055883-77148261	Enhancers Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv582251	chr2:77055883-77154515	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv874327	chr2:77085752-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	nsv525625	chr2:77096124-77113949	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv874328	chr2:77096124-77196122	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	nsv874329	chr2:77096124-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77094400-77098400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr2:77095400-77097600	Weak transcription	NH-A	brain
3	chr2:77096800-77098200	Enhancers	HUVEC	blood vessel
4	chr2:77097000-77097400	Enhancers	HUES64 Cell Line	embryonic stem cell

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