Variant report

Variant	rs13033902
Chromosome Location	chr2:77264354-77264355
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10186823	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs12713886	0.86[EUR][1000 genomes]
rs12713890	0.94[CEU][hapmap];0.89[GIH][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs12713891	0.87[EUR][1000 genomes]
rs13021476	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs13034088	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13388552	0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13397044	0.89[CEU][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap]
rs13406560	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1348825	0.81[EUR][1000 genomes]
rs1348828	0.95[CEU][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1348829	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1374392	0.95[CEU][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs1374394	0.89[CEU][hapmap];0.81[CHD][hapmap];0.88[GIH][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap]
rs1446689	0.89[CEU][hapmap];0.85[GIH][hapmap]
rs1446690	0.89[CEU][hapmap]
rs1446694	0.95[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1446700	0.82[JPT][hapmap]
rs1446706	0.95[CEU][hapmap];0.87[JPT][hapmap];0.86[EUR][1000 genomes]
rs1446714	0.89[CEU][hapmap]
rs1446717	0.95[CEU][hapmap];0.88[GIH][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs1446718	0.95[CEU][hapmap];0.82[GIH][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs1446720	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs1542187	0.95[CEU][hapmap];0.86[GIH][hapmap];0.89[TSI][hapmap]
rs17013615	0.95[CEU][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];0.87[JPT][hapmap];0.85[MEX][hapmap];0.96[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17040496	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs17040500	0.95[CEU][hapmap];0.85[CHD][hapmap];0.94[GIH][hapmap];0.90[MEX][hapmap];0.96[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17089	0.95[CEU][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];0.90[MEX][hapmap];0.96[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1900342	0.89[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs1982341	0.89[CEU][hapmap]
rs2044485	0.85[CEU][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs34287182	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34577944	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35458070	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4510248	0.89[CEU][hapmap];0.91[GIH][hapmap];0.88[LWK][hapmap];0.82[TSI][hapmap]
rs4853290	0.95[CEU][hapmap];0.87[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58936967	0.84[EUR][1000 genomes]
rs6547106	0.80[CEU][hapmap];0.93[TSI][hapmap]
rs6547107	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs6547108	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs6547109	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs6547111	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs6547113	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6547119	0.84[CEU][hapmap];0.91[GIH][hapmap];0.94[LWK][hapmap];0.81[MEX][hapmap];0.82[TSI][hapmap]
rs6706194	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6724799	0.84[EUR][1000 genomes]
rs6737296	0.95[CEU][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs6741095	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6750979	0.81[CEU][hapmap];0.86[TSI][hapmap]
rs6754347	0.84[CEU][hapmap]
rs6758707	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs72823154	0.84[EUR][1000 genomes]
rs7561189	0.95[CEU][hapmap];0.82[GIH][hapmap];0.92[TSI][hapmap]
rs7569919	0.81[EUR][1000 genomes]
rs7569994	0.80[EUR][1000 genomes]
rs7595678	0.95[CEU][hapmap];0.82[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.90[MEX][hapmap];0.96[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv997284	chr2:77233426-77303198	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1014895	chr2:77263452-77414507	Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv874331	chr2:77264354-77305123	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77263000-77265000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr2:77263000-77265600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr2:77263400-77265000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr2:77264000-77264800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr2:77264000-77265000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:77264200-77264400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr2:77264200-77265200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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