Variant report

Variant	rs12713891
Chromosome Location	chr2:77253092-77253093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs12713886	0.90[EUR][1000 genomes]
rs12713890	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13021476	0.92[EUR][1000 genomes]
rs13033902	0.87[EUR][1000 genomes]
rs13034088	0.89[EUR][1000 genomes]
rs13388552	0.88[EUR][1000 genomes]
rs13406560	0.93[EUR][1000 genomes]
rs1348828	0.93[EUR][1000 genomes]
rs1348829	0.93[EUR][1000 genomes]
rs1374392	0.91[EUR][1000 genomes]
rs1446694	0.92[EUR][1000 genomes]
rs1446706	0.91[EUR][1000 genomes]
rs1446713	0.88[EUR][1000 genomes]
rs1446714	0.88[EUR][1000 genomes]
rs1446717	0.91[EUR][1000 genomes]
rs1446718	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1446720	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17013615	0.93[EUR][1000 genomes]
rs17040496	0.92[EUR][1000 genomes]
rs17040500	0.94[EUR][1000 genomes]
rs17089	0.94[EUR][1000 genomes]
rs1838879	0.86[EUR][1000 genomes]
rs2044485	0.92[EUR][1000 genomes]
rs34287182	0.87[EUR][1000 genomes]
rs34577944	0.94[EUR][1000 genomes]
rs35458070	0.94[EUR][1000 genomes]
rs4853290	0.87[EUR][1000 genomes]
rs58936967	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6547106	0.88[EUR][1000 genomes]
rs6547107	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6547108	0.88[EUR][1000 genomes]
rs6547109	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6547111	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6547113	0.91[EUR][1000 genomes]
rs6706194	0.91[EUR][1000 genomes]
rs6724799	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6737296	0.92[EUR][1000 genomes]
rs6741095	0.94[EUR][1000 genomes]
rs6750979	0.87[EUR][1000 genomes]
rs6758707	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72823154	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7556871	0.88[EUR][1000 genomes]
rs7569919	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7569994	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7595678	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv519950	chr2:77213103-77256291	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv997284	chr2:77233426-77303198	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1007408	chr2:77235194-77255152	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77252400-77253600	Enhancers	Liver	Liver

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