Variant report

Variant	rs7556871
Chromosome Location	chr2:77204207-77204208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs12713886	0.92[EUR][1000 genomes]
rs12713890	0.88[EUR][1000 genomes]
rs12713891	0.88[EUR][1000 genomes]
rs13021476	0.93[EUR][1000 genomes]
rs13034088	0.82[EUR][1000 genomes]
rs13388552	0.88[EUR][1000 genomes]
rs13406560	0.85[EUR][1000 genomes]
rs1348828	0.83[EUR][1000 genomes]
rs1348829	0.83[EUR][1000 genomes]
rs1374392	0.92[EUR][1000 genomes]
rs1446694	0.82[EUR][1000 genomes]
rs1446706	0.85[EUR][1000 genomes]
rs1446713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1446714	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1446717	0.91[EUR][1000 genomes]
rs1446718	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1446720	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17013615	0.85[EUR][1000 genomes]
rs17040496	0.93[EUR][1000 genomes]
rs17040500	0.83[EUR][1000 genomes]
rs17089	0.83[EUR][1000 genomes]
rs1838879	0.88[EUR][1000 genomes]
rs2044485	0.93[EUR][1000 genomes]
rs34577944	0.83[EUR][1000 genomes]
rs35458070	0.83[EUR][1000 genomes]
rs4853290	0.82[EUR][1000 genomes]
rs58936967	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6547106	0.89[EUR][1000 genomes]
rs6547107	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6547108	0.90[EUR][1000 genomes]
rs6547109	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6547111	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6547113	0.87[EUR][1000 genomes]
rs6706194	0.87[EUR][1000 genomes]
rs6724799	0.88[EUR][1000 genomes]
rs6737296	0.93[EUR][1000 genomes]
rs6741095	0.83[EUR][1000 genomes]
rs6750979	0.91[EUR][1000 genomes]
rs6758707	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72823154	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7569919	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7569994	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7595678	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874322	chr2:77031247-77209750	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv2752990	chr2:77038541-77217310	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv874327	chr2:77085752-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv874329	chr2:77096124-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv874330	chr2:77103719-77209750	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv2756931	chr2:77185856-77209051	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv2759066	chr2:77185856-77209051	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv2762264	chr2:77202107-77206452	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77203000-77206600	Enhancers	Fetal Lung	lung
2	chr2:77203800-77206800	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr2:77204200-77204600	Weak transcription	HUVEC	blood vessel

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