Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10186823	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12713890	0.83[CEU][hapmap]
rs13021476	0.81[CEU][hapmap]
rs13033902	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs13034088	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs13397044	0.94[CEU][hapmap];0.90[EUR][1000 genomes]
rs1348825	0.93[EUR][1000 genomes]
rs1446689	0.94[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1446690	0.95[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1446694	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs1446720	0.80[CEU][hapmap]
rs17040496	0.81[CEU][hapmap]
rs1900342	0.95[CEU][hapmap];0.95[EUR][1000 genomes]
rs1982341	0.95[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4510248	0.94[CEU][hapmap]
rs6547107	0.81[CEU][hapmap]
rs6547108	0.81[CEU][hapmap]
rs6547109	0.81[CEU][hapmap]
rs6547111	0.81[CEU][hapmap]
rs6547119	1.00[CEU][hapmap]
rs7595678	0.89[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv997284	chr2:77233426-77303198	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1014895	chr2:77263452-77414507	Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv874331	chr2:77264354-77305123	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
6	nsv961322	chr2:77267823-77272264	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be: