Variant report

Variant	rs1374393
Chromosome Location	chr2:77221570-77221571
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10520168	0.90[JPT][hapmap]
rs10520169	1.00[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap]
rs12713886	0.82[ASN][1000 genomes]
rs13388552	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs13389562	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs1348828	0.91[CHB][hapmap]
rs1374394	1.00[CHB][hapmap]
rs1446694	0.83[CHB][hapmap]
rs1446706	0.82[CHB][hapmap]
rs1446717	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs17013302	1.00[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap]
rs17013306	1.00[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap]
rs17013313	1.00[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap]
rs17013338	0.90[CEU][hapmap]
rs17013364	1.00[CEU][hapmap];0.83[CHB][hapmap];0.81[EUR][1000 genomes]
rs17013366	0.81[EUR][1000 genomes]
rs17013420	0.82[CEU][hapmap];0.86[CHB][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap]
rs17013458	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap]
rs17013615	0.95[CHB][hapmap]
rs17040500	0.95[CHB][hapmap]
rs17089	0.95[CHB][hapmap]
rs1867891	0.90[CEU][hapmap]
rs1921625	1.00[CEU][hapmap];0.96[CHB][hapmap];0.90[JPT][hapmap]
rs1921626	1.00[YRI][hapmap]
rs1950122	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs4853290	0.91[CHB][hapmap]
rs58758157	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58852194	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6547113	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs6706194	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs6716081	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs914389	1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv519950	chr2:77213103-77256291	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv829468	chr2:77216448-77224533	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
5	nsv961764	chr2:77216571-77228053	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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