Variant report

Variant	rs7564533
Chromosome Location	chr2:77181996-77181997
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10084200	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10189940	1.00[CEU][hapmap]
rs10190210	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs12618957	1.00[CEU][hapmap];0.91[CHB][hapmap]
rs13398751	0.82[CHB][hapmap]
rs17013242	0.86[CHB][hapmap]
rs17013338	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17013359	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17013364	0.85[EUR][1000 genomes]
rs17013366	0.85[EUR][1000 genomes]
rs17013420	0.90[JPT][hapmap]
rs17013458	0.85[JPT][hapmap];1.00[YRI][hapmap]
rs1921626	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs1921628	0.81[AFR][1000 genomes]
rs1950122	0.85[JPT][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes]
rs2178573	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6716081	1.00[YRI][hapmap];0.89[EUR][1000 genomes]
rs72821289	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72821295	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9751593	0.92[AFR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874322	chr2:77031247-77209750	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv2752990	chr2:77038541-77217310	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv874324	chr2:77048896-77201916	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv874327	chr2:77085752-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv874328	chr2:77096124-77196122	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv874329	chr2:77096124-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv874330	chr2:77103719-77209750	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv818054	chr2:77172693-77192765	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1008307	chr2:77174354-77197565	Weak transcription Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77180400-77182800	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr2:77180400-77183000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr2:77180600-77183000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr2:77181600-77182000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr2:77181600-77182600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr2:77181600-77185600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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