Variant report

Variant	rs10196207
Chromosome Location	chr2:76957158-76957159
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10174011	1.00[AMR][1000 genomes]
rs10184167	1.00[AMR][1000 genomes]
rs10199769	1.00[YRI][hapmap]
rs10202786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10209673	1.00[AMR][1000 genomes]
rs13353371	1.00[AMR][1000 genomes]
rs13394242	1.00[AMR][1000 genomes]
rs13402959	1.00[AMR][1000 genomes]
rs13404781	1.00[AMR][1000 genomes]
rs13430399	1.00[YRI][hapmap]
rs73939848	1.00[AMR][1000 genomes]
rs7569204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9973350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv582235	chr2:76881210-76997763	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1003325	chr2:76914457-76957491	Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
3	nsv1002481	chr2:76919605-76957491	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	nsv999909	chr2:76928121-76957491	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases
5	nsv1012147	chr2:76936019-76957491	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv874319	chr2:76949101-76979415	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76956000-76957800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:76956200-76957400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr2:76956200-76957800	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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