Variant report

Variant	rs7569204
Chromosome Location	chr2:76966750-76966751
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10174011	1.00[AMR][1000 genomes]
rs10184167	1.00[AMR][1000 genomes]
rs10196207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10202786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10209673	1.00[AMR][1000 genomes]
rs13353371	1.00[AMR][1000 genomes]
rs13394242	1.00[AMR][1000 genomes]
rs13402959	1.00[AMR][1000 genomes]
rs13404781	1.00[AMR][1000 genomes]
rs73939848	1.00[AMR][1000 genomes]
rs9973350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv582235	chr2:76881210-76997763	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv874319	chr2:76949101-76979415	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76960800-76974600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr2:76961600-76967200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr2:76963800-76985800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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